Evidence map›Paper›PMID 31201823›Full record

ArticleJournal of neuroscience methods2019

Improving human cortical sulcal curve labeling in large scale cross-sectional MRI using deep neural networks.

Prasanna Parvathaneni, Vishwesh Nath, Maureen McHugo, Yuankai Huo, Susan M Resnick, Neil D Woodward, Bennett A Landman, Ilwoo Lyu

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Prasanna ParvathaneniElectrical Engineering, Vanderbilt Universitay, Nashville, TN, USA. Electronic address: Prasanna.Parvathaneni@vanderbilt.edu.
Vishwesh NathComputer Science, Vanderbilt Universitay, Nashville, TN, USA.
Maureen McHugoDepartment of Psychiatry and Behavioral Science, Vanderbilt Universitay, Nashville, TN, USA.
Yuankai HuoElectrical Engineering, Vanderbilt Universitay, Nashville, TN, USA.
Susan M ResnickNational Institutes of Health, Bethesda, MD, USA.
Neil D WoodwardDepartment of Psychiatry and Behavioral Science, Vanderbilt Universitay, Nashville, TN, USA.
Bennett A LandmanElectrical Engineering, Vanderbilt Universitay, Nashville, TN, USA; Computer Science, Vanderbilt Universitay, Nashville, TN, USA; Department of Psychiatry and Behavioral Science, Vanderbilt Universitay, Nashville, TN, USA.
Ilwoo LyuComputer Science, Vanderbilt Universitay, Nashville, TN, USA. Electronic address: lwoo.Lyu@vanderbilt.edu.

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
Research Education ComponentP30AG066507 · NIA · JOHNS HOPKINS UNIVERSITY · PI Corinne Pettigrew · 2020 to 2026
$29.3M
Neuroimaging Predictors of Cognitive Decline, Impairment, and ResilienceZIAAG000191 · NIA · NATIONAL INSTITUTE ON AGING · PI FERRUCCI, LUIGI · 2009 to 2025
$26.4M
Controlling Quality and Capturing Uncertainty in Advanced Diffusion Weighted MRIR01EB017230 · NIBIB · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2015 to 2024
$5.1M
Thalamocortical Networks in PsychosisR01MH102266 · NIMH · VANDERBILT UNIVERSITY MEDICAL CENTER · PI WOODWARD, NEIL D. · 2014 to 2018
$2.3M
NCRR NIH HHS UL1 RR024975NIA NIH HHS P30 AG066507NIBIB NIH HHS R01 EB017230NIMH NIH HHS R01 MH102266
6 · The paper itself

Abstract

backgroundHuman cortical primary sulci are relatively stable landmarks and commonly observed across the population. Despite their stability, the primary sulci exhibit phenotypic variability. NEW

methodWe propose a fully automated pipeline that integrates both sulcal curve extraction and labeling. In this study, we use a large normal control population (n = 1424) to train neural networks for accurately labeling the primary sulci. Briefly, we use sulcal curve distance map, surface parcellation, mean curvature and spectral features to delineate their sulcal labels. We evaluate the proposed method with 8 primary sulcal curves in the left and right hemispheres compared to an established multi-atlas curve labeling method.

resultsSulcal labels by the proposed method reasonably well agree with manual labeling. The proposed method outperforms the existing multi-atlas curve labeling method. COMPARISON WITH EXISTING

methodSignificantly improved sulcal labeling results are achieved with over 12.5 and 20.6 percent improvement on labeling accuracy in the left and right hemispheres, respectively compared to that of a multi-atlas curve labeling method in eight curves (p≪0.001, two-sample t-test).

conclusionThe proposed method offers a computationally efficient and robust labeling of major sulci.

Indexed as

Anatomic LandmarksDeep LearningAdultAgedAged, 80 and overCerebral CortexFemaleHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMaleMiddle AgedNeuroimagingAnalysisCortical surfaceDNNShapeSulcal curveSulcal labeling

Identifiers

PMID31201823
PMCPMC6663093

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.