Evidence map›Paper›PMID 31201724›Full record

ArticleJournal of microbiology (Seoul, Korea)2019

Isolation, cultivation, and genome analysis of proteorhodopsin-containing SAR116-clade strain Candidatus Puniceispirillum marinum IMCC1322.

Junhak Lee, Kae Kyoung Kwon, Seung-Il Lim, Jaeho Song, Ah Reum Choi, Sung-Hyun Yang, Kwang-Hwan Jung, Jung-Hyun Lee, Sung Gyun Kang, Hyun-Myung Oh and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Junhak LeeInstitute of Liberal Arts Education, Pukyong National University, Busan, 48547, Republic of Korea.
Kae Kyoung KwonMarine Biotechnology Research Division, Korea Institute of Ocean Science & Technology, Busan, 49111, Republic of Korea.
Seung-Il LimCell Biotech, Co., Ltd., Gimpo, 10003, Republic of Korea.
Jaeho SongDivision of Biology and Ocean Sciences, Inha University, Incheon, 22212, Republic of Korea.
Ah Reum ChoiDepartment of Life Science and Interdisciplinary Program of Integrated Biotechnology, Sogang University, Seoul, 04107, Republic of Korea.
Sung-Hyun YangMarine Biotechnology Research Division, Korea Institute of Ocean Science & Technology, Busan, 49111, Republic of Korea.
Kwang-Hwan JungDepartment of Life Science and Interdisciplinary Program of Integrated Biotechnology, Sogang University, Seoul, 04107, Republic of Korea.
Jung-Hyun LeeMarine Biotechnology Research Division, Korea Institute of Ocean Science & Technology, Busan, 49111, Republic of Korea.
Sung Gyun KangMarine Biotechnology Research Division, Korea Institute of Ocean Science & Technology, Busan, 49111, Republic of Korea.
Hyun-Myung OhInstitute of Liberal Arts Education, Pukyong National University, Busan, 48547, Republic of Korea. marinebio@pknu.ac.kr.
Jang-Cheon ChoDivision of Biology and Ocean Sciences, Inha University, Incheon, 22212, Republic of Korea. chojc@inha.ac.kr.
Korea Institute of Ocean Science and Technology · KRInha University · KRSogang University · KRCell Biotech (South Korea) · KRPukyong National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strain IMCC1322 was isolated from a surface water sample from the East Sea of Korea. Based on 16S rRNA analysis, IMCC1322 was found to belong to the OCS28 sub-clade of SAR116. The cells appeared as short vibrioids in logarithmic-phase culture, and elongated spirals during incubation with mitomycin or in aged culture. Growth characteristics of strain IMCC1322 were further evaluated based on genomic information; proteorhodopsin (PR), carbon monoxide dehydrogenase, and dimethylsulfoniopropionate (DMSP)-utilizing enzymes. IMCC1322 PR was characterized as a functional retinylidene protein that acts as a light-driven proton pump in the cytoplasmic membrane. However, the PR-dependent phototrophic potential of strain IMCC1322 was only observed under CO-inhibited and nutrient-limited culture conditions. A DMSP-enhanced growth response was observed in addition to cultures grown on C

Indexed as

AlphaproteobacteriaRhodopsins, MicrobialBacterial Typing TechniquesDNA, BacterialRepublic of KoreaRNA, Ribosomal, 16SSeawaterSulfonium CompoundsWhole Genome SequencingdimethylpropiothetinDNA, BacterialproteorhodopsinRhodopsins, MicrobialRNA, Ribosomal, 16SSulfonium CompoundsCanididatus Puniceispirillum marinumcarbon monoxidedimethylsulfoniopropionatelight-emitting diodemitomycin CproteorhodopsinSAR116

Identifiers

PMID31201724
OpenAlexW2950903527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.