Evidence map›Paper›PMID 31201353›Full record

ArticleScientific reports2019

Nitrifier abundance and diversity peak at deep redox transition zones.

Rui Zhao, Bjarte Hannisdal, Josè M Mogollon, Steffen L Jørgensen

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  7. Occurrence, Diversity, and Genomes of "Applied and environmental microbiology · 2022
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  8. Article
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  14. Article
  15. Nitrogen species control the interaction between NOEnvironmental science and pollution research international · 2021
    Article
  16. Article
  17. Article
  18. Geochemical transition zone powering microbial growth in subsurface sediments.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rui ZhaoDepartment of Biology, University of Bergen, Thormøhlens gate 53A, Bergen, 5007, Norway. ruizhao@udel.edu.
Bjarte HannisdalK.G. Jebsen Centre for Deep Sea Research, Department of Earth Science, University of Bergen, Allegaten 41, Bergen, 5007, Norway.ORCID http://orcid.org/0000-0002-7637-758X
Josè M MogollonInstitute of Environmental Sciences (CML), Leiden University, Leiden, Netherlands.ORCID http://orcid.org/0000-0002-7110-5470
Steffen L JørgensenK.G. Jebsen Centre for Deep Sea Research, Department of Earth Science, University of Bergen, Allegaten 41, Bergen, 5007, Norway. steffen.jorgensen@uib.no.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

More than half of the global ocean floor is draped by nutrient-starved sediments characterized by deep oxygen penetration and a prevalence of oxidized nitrogen. Despite low energy availability, this habitat hosts a vast microbial population, and geochemical characteristics suggest that nitrogen compounds are an energy source critical to sustaining this biomass. However, metabolic rates of nitrogen transformation and their link to microbial survival in this global-scale ecosystem remain virtually unknown. Here we provide quantitative constraints on microbial nitrogen cycling in open ocean oligotrophic sediments from seafloor to basement, spanning approximately 8 million years. We find active microbial nitrogen transformation throughout the sediment column but at very low rates. Local peaks in diversity and abundance of nitrifiers and denitrifiers occur at redox transition zones deep within the sediments, strongly indicating that these microbes are revived from their maintenance state and start growing again after millions of years of attrition.

Identifiers

PMID31201353
PMCPMC6572806

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.