Evidence map›Paper›PMID 31201314›Full record

ArticleNature communications2019

NCP activates chloroplast transcription by controlling phytochrome-dependent dual nuclear and plastidial switches.

Emily J Yang, Chan Yul Yoo, Jiangxin Liu, He Wang, Jun Cao, Fay-Wei Li, Kathleen M Pryer, Tai-Ping Sun, Detlef Weigel, Pei Zhou and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
9.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 65 citations in OpenAlex.

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  16. Regulation of chloroplast biogenesis, development, and signaling by endogenous and exogenous cues.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  17. Characterization of Thermoresponsive Photobody Dynamics.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Emily J YangDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0002-9900-7389
Chan Yul YooDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0001-6159-7443
Jiangxin LiuDepartment of Biochemistry, Duke University Medical Center, Durham, NC, 27710, USA.
He WangDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.
Jun CaoDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, 72076, Tübingen, Germany.
Fay-Wei LiDepartment of Biology, Duke University, Durham, NC, 27708, USA.ORCID http://orcid.org/0000-0002-0076-0152
Kathleen M PryerDepartment of Biology, Duke University, Durham, NC, 27708, USA.ORCID http://orcid.org/0000-0002-9776-6736
Tai-Ping SunDepartment of Biology, Duke University, Durham, NC, 27708, USA.
Detlef WeigelDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, 72076, Tübingen, Germany.
Pei ZhouDepartment of Biochemistry, Duke University Medical Center, Durham, NC, 27710, USA. peizhou@biochem.duke.edu.ORCID http://orcid.org/0000-0002-7823-3416
Meng ChenDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA. meng.chen@ucr.edu.ORCID http://orcid.org/0000-0003-0351-5897
Duke University · USUniversity of California, Riverside · USMax Planck Institute for Developmental Biology · DEKunming Institute of Botany · CN

Funding

Genetic Characterization of Phytochrome Nuclear Bodies in Plant Light SignalingR01GM087388 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2010 to 2023
$5.8M
Structure and Function Analyses of DELLA Interacting Proteins in ArabidopsisR01GM100051 · NIGMS · DUKE UNIVERSITY · PI SUN, TAI-PING · 2012 to 2021
$2.4M
Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
NIGMS NIH HHS R01 GM087388NIGMS NIH HHS R01 GM100051NIH HHS S10 OD016290NSF | BIO | Division of Integrative Organismal Systems (IOS) IOS-1051602U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM087388
6 · The paper itself

Abstract

Phytochromes initiate chloroplast biogenesis by activating genes encoding the photosynthetic apparatus, including photosynthesis-associated plastid-encoded genes (PhAPGs). PhAPGs are transcribed by a bacterial-type RNA polymerase (PEP), but how phytochromes in the nucleus activate chloroplast gene expression remains enigmatic. We report here a forward genetic screen in Arabidopsis that identified NUCLEAR CONTROL OF PEP ACTIVITY (NCP) as a necessary component of phytochrome signaling for PhAPG activation. NCP is dual-targeted to plastids and the nucleus. While nuclear NCP mediates the degradation of two repressors of chloroplast biogenesis, PIF1 and PIF3, NCP in plastids promotes the assembly of the PEP complex for PhAPG transcription. NCP and its paralog RCB are non-catalytic thioredoxin-like proteins that diverged in seed plants to adopt nonredundant functions in phytochrome signaling. These results support a model in which phytochromes control PhAPG expression through light-dependent double nuclear and plastidial switches that are linked by evolutionarily conserved and dual-localized regulatory proteins.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCell NucleusChloroplastsDNA-Directed RNA PolymerasesGene Expression Regulation, PlantLightMolecular ChaperonesPhotosynthesisPhytochromePlants, Genetically ModifiedPlastidsSignal TransductionTranscription, GeneticArabidopsis ProteinsAt2g20180 protein, ArabidopsisAt2g31840 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsDNA-Directed RNA PolymerasesMolecular ChaperonesPhytochromePIF3 protein, Arabidopsis

Identifiers

PMID31201314
PMCPMC6570768
OpenAlexW2949879949

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.