Evidence map›Paper›PMID 31201273›Full record

ArticleThe Journal of biological chemistry2019

Solution structure and functional investigation of human guanylate kinase reveals allosteric networking and a crucial role for the enzyme in cancer.

Nazimuddin Khan, Parag P Shah, David Ban, Pablo Trigo-Mouriño, Marta G Carneiro, Lynn DeLeeuw, William L Dean, John O Trent, Levi J Beverly, Manfred Konrad and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Dynamic metabolic modelling of ATP allocation during viral infection.Journal of the Royal Society, Interface · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Nazimuddin KhanDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202.
Parag P ShahDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202.
David BanDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202.
Pablo Trigo-MouriñoDepartment for NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Marta G CarneiroDepartment for NMR-Based Structural Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.ORCID 0000-0001-7827-1685
Lynn DeLeeuwDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202.
William L DeanDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202.
John O TrentDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202.
Levi J BeverlyDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202.
Manfred KonradEnzyme Biochemistry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany mkonrad@mpibpc.mpg.de.
Donghan LeeDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202 donghan.lee@louisville.edu.
T Michael SaboDepartment of Medicine, James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202 mike.sabo@louisville.edu.ORCID 0000-0002-9573-145X
University of Louisville · USMax Planck Institute for Biophysical Chemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human guanylate kinase (hGMPK) is the only known enzyme responsible for cellular GDP production, making it essential for cellular viability and proliferation. Moreover, hGMPK has been assigned a critical role in metabolic activation of antiviral and antineoplastic nucleoside-analog prodrugs. Given that hGMPK is indispensable for producing the nucleotide building blocks of DNA, RNA, and cGMP and that cancer cells possess elevated GTP levels, it is surprising that a detailed structural and functional characterization of hGMPK is lacking. Here, we present the first high-resolution structure of hGMPK in the apo form, determined with NMR spectroscopy. The structure revealed that hGMPK consists of three distinct regions designated as the LID, GMP-binding (GMP-BD), and CORE domains and is in an open configuration that is nucleotide binding-competent. We also demonstrate that nonsynonymous single-nucleotide variants (nsSNVs) of the hGMPK CORE domain distant from the nucleotide-binding site of this domain modulate enzymatic activity without significantly affecting hGMPK's structure. Finally, we show that knocking down the

Indexed as

Allosteric RegulationAnimalsCell Line, TumorCrystallography, X-RayGuanylate KinasesHumansKineticsLung NeoplasmsMiceMutagenesis, Site-DirectedNuclear Magnetic Resonance, BiomolecularProtein Structure, TertiaryRecombinant ProteinsRNA InterferenceRNA, Small InterferingGuanylate KinasesRecombinant ProteinsRNA, Small Interferingenzyme kineticsenzyme mutationguanylate kinasehGMPKlung cancernon-synonymous single nucleotide variants (nsSNV)nuclear magnetic resonance (NMR)protein structuresolution structure

Identifiers

PMID31201273
PMCPMC6682748
OpenAlexW2952082796

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.