Evidence map›Paper›PMID 31200438›Full record

ArticleInternational journal of molecular sciences2019

Identification of a Retroelement-Containing Human Transcript Induced in the Nucleus by Vaccination.

Tomoyuki Honda, Keiko Takemoto, Keiji Ueda

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Modeling Borna Disease VirusJournal of virology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Tomoyuki HondaDivision of Virology, Department of Microbiology and Immunology, Osaka University Graduate School of Medicine, Osaka 565-0871, Japan. thonda@virus.med.osaka-u.ac.jp.
Keiko TakemotoInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto 606-8397, Japan. ktakemot@infront.kyoto-u.ac.jp.
Keiji UedaDivision of Virology, Department of Microbiology and Immunology, Osaka University Graduate School of Medicine, Osaka 565-0871, Japan. kueda@virus.med.osaka-u.ac.jp.
Osaka University · JPKyoto University · JP

Funding

Japan Society for the Promotion of Science 15K08496Japan Society for the Promotion of Science 18H02664Japan Society for the Promotion of Science 18K19449Senri Life Science Foundation NoneSuzuken Memorial Foundation NoneTakeda Science Foundation NoneThe Shimizu Foundation for Immunology and Neuroscience Grant for 2015
6 · The paper itself

Abstract

Endogenous retroelements constitute almost half of the mammalian genome. Given that more than 60% of human genomic bases are transcribed, transcripts containing these retroelements may impact various biological processes. However, the physiological roles of most retroelement-containing transcripts are yet to be revealed. Here, we profiled the expression of retroelement-containing human transcripts during vaccination and found that vaccination upregulated transcripts containing only particular retroelements, such as the MLT-int element of endogenous retroviruses. MLT-int-containing transcripts were distributed mainly in the nucleus, suggesting their unique roles in the nucleus. Furthermore, we demonstrated that MLT-int RNA suppressed interferon promoter activity in the absence of immune stimuli. Based on these lines of evidence, we speculate a model of a role of the previously unnoticed MLT-int element in preventing excess innate immune activation after elimination of immune stimuli. Our results may emphasize the importance of retroelement-containing transcripts in maintaining host immune homeostasis.

Indexed as

RetroelementsUp-RegulationVaccinationCell NucleusHEK293 CellsHumansImmunity, InnateInterferonsPromoter Regions, GeneticRNAInterferonsRetroelementsRNAendogenous retrovirusinnate immunityinterferonMLT-intretroelementvaccination

Identifiers

PMID31200438
PMCPMC6627062
OpenAlexW2949170652

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.