Evidence map›Paper›PMID 31198905›Full record

ArticleContact (Thousand Oaks (Ventura County, Calif.))2019

Fluorescent tools to analyse peroxisome-ER interactions in mammalian cells.

Alexa Bishop, Maki Kamoshita, Josiah B Passmore, Christian Hacker, Tina A Schrader, Hans R Waterham, Joseph L Costello, Michael Schrader

Open access · goldAbstract read
In one paragraph

Article in Contact (Thousand Oaks (Ventura County, Calif.)), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Imaging interorganelle contacts at a glance.Journal of cell science · 2024
    Review
  4. Article
  5. The peroxisome: an update on mysteries 3.0.Histochemistry and cell biology · 2024
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Determinants of Peroxisome Membrane Dynamics.Frontiers in physiology · 2022
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Alexa BishopBiosciences, University of Exeter, Exeter, EX4 4QD, UK.
Maki KamoshitaBiosciences, University of Exeter, Exeter, EX4 4QD, UK.
Josiah B PassmoreBiosciences, University of Exeter, Exeter, EX4 4QD, UK.
Christian HackerBiosciences, University of Exeter, Exeter, EX4 4QD, UK.
Tina A SchraderBiosciences, University of Exeter, Exeter, EX4 4QD, UK.
Hans R WaterhamLaboratory Genetic Metabolic Diseases, Department of Clinical Chemistry, Academic Medical Center, Amsterdam, The Netherlands.
Joseph L CostelloBiosciences, University of Exeter, Exeter, EX4 4QD, UK.
Michael SchraderBiosciences, University of Exeter, Exeter, EX4 4QD, UK.
University of Exeter · GBAmsterdam UMC Location University of Amsterdam · NLSt George's, University of London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/N01541X/1Medical Research Council MC_PC_16044
6 · The paper itself

Abstract

Peroxisomes and the endoplasmic reticulum (ER) cooperate extensively in lipid-related metabolic pathways, and the ER also provides phospholipids to enable the peroxisomal membrane to expand prior to division. Recently, we identified peroxisomal proteins ACBD5 and ACBD4, and the ER protein VAPB as tethering components which physically interact to foster peroxisome-ER associations at membrane contact sites. Overexpression or loss of these tether proteins alters the extent of peroxisome-ER interactions, impacting on lipid exchange between these two compartments. To facilitate further studies into peroxisome-ER associations at the level of membrane contact sites, their role, composition and regulation, we have developed two fluorescence-based systems to monitor peroxisome-ER interactions. We modified a proximity ligation assay and a split-fluorescence reporter system using split superfolder green fluorescent protein. Using the proximity ligation assay we were able to measure changes in peroxisome-ER interactions whilst the split-fluorescence reporter was more limited and only allowed us to label ER-peroxisome contacts. We show that both techniques can be useful additions to the toolkit of methods to study peroxisome-ER associations and explore the relative merits of each.

Indexed as

ACBD5ERmembrane contact sitesPeroxisomesVAPB

Identifiers

PMID31198905
PMCPMC6565432
OpenAlexW2936623852

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.