Evidence map›Paper›PMID 31197176›Full record

ArticleScientific data2019

Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis.

Lei Sun, Baoqing Zhu, Xuanyin Zhang, Guojun Zhang, Ailing Yan, Huiling Wang, Xiaoyue Wang, Haiying Xu

Abstract readDataset
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lei SunBeijing Academy of Forestry and Pomology Sciences, Beijing, 100093, China.
Baoqing ZhuCollege of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.
Xuanyin ZhangBeijing Academy of Forestry and Pomology Sciences, Beijing, 100093, China.
Guojun ZhangBeijing Academy of Forestry and Pomology Sciences, Beijing, 100093, China.
Ailing YanBeijing Academy of Forestry and Pomology Sciences, Beijing, 100093, China.
Huiling WangBeijing Academy of Forestry and Pomology Sciences, Beijing, 100093, China.
Xiaoyue WangBeijing Academy of Forestry and Pomology Sciences, Beijing, 100093, China.
Haiying XuKey Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, 100093, China. xuhaiying@baafs.net.cn.

Funding

Beijing Academy of Agricultural and Forestry Sciences (BAAFS) KJCX20180411Earmarked Fund for China Agriculture Research System CARS-29Natural Science Foundation of Beijing Municipality (Beijing Natural Science Foundation) 6192017
6 · The paper itself

Abstract

Vitis vinifera is widely grown worldwide for making wine and for use as table grapes. Of the existing cultivars, some have a floral and fruity flavour, referred to as a Muscat flavour. It is well-documented that this flavour originates from a series of terpene compounds, but the mechanism of terpene content differences among the Muscat-type cultivars remains unclear. Transcript and terpene metabolite profiles were integrated to elucidate the molecular mechanism of this phenomenon. In this research, three genotypes with different aromatic strengths were investigated by RNA sequencing. A total of 27 fruit samples from three biological replicates were sequenced on Illumina HiSeq2000 at three stages, corresponding to the veraison; berries had intermediate Brix value and were harvest-ripe. After quality assessment and data clearance, a total of 254.18 Gb of data with more than 97% Q20 bases were obtained, approximately 9.41 Gb data were generated per sample. These results will provide a valuable dataset for the discovery of the mechanism of terpene biosynthesis.

Indexed as

TranscriptomeGene Expression ProfilingTerpenesVitisTerpenes

Identifiers

PMID31197176
PMCPMC6565711

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.