Evidence map›Paper›PMID 31197149›Full record

ArticleNature communications2019

Identification of a genomic enhancer that enforces proper apoptosis induction in thymic negative selection.

Miki Arai Hojo, Kyoko Masuda, Hiroaki Hojo, Yosuke Nagahata, Keiko Yasuda, Daiya Ohara, Yusuke Takeuchi, Keiji Hirota, Yutaka Suzuki, Hiroshi Kawamoto and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. CIITA/PRMT5 promote CD4BMC medicine · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. The partitioning of TCR repertoires by thymic selection.The Journal of experimental medicine · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Miki Arai HojoGraduate School of Frontier Science, The University of Tokyo, Kashiwa-shi, Chiba, 277-8562, Japan.
Kyoko MasudaInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto-shi, Kyoto, 606-8507, Japan.
Hiroaki HojoThe Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International (ATR), Soraku-gun, Kyoto, 619-0237, Japan.
Yosuke NagahataInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto-shi, Kyoto, 606-8507, Japan.
Keiko YasudaInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto-shi, Kyoto, 606-8507, Japan.
Daiya OharaInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto-shi, Kyoto, 606-8507, Japan.
Yusuke TakeuchiInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto-shi, Kyoto, 606-8507, Japan.
Keiji HirotaInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto-shi, Kyoto, 606-8507, Japan.
Yutaka SuzukiGraduate School of Frontier Science, The University of Tokyo, Kashiwa-shi, Chiba, 277-8562, Japan.
Hiroshi KawamotoInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto-shi, Kyoto, 606-8507, Japan.
Shinpei KawaokaThe Thomas N. Sato BioMEC-X Laboratories, Advanced Telecommunications Research Institute International (ATR), Soraku-gun, Kyoto, 619-0237, Japan. kawaokashinpei@gmail.com.ORCID http://orcid.org/0000-0003-4064-6781
Kyoto University · JPAdvanced Telecommunications Research Institute International · JPThe University of Tokyo · JP

Funding

Japan Foundation for Applied Enzymology naMEXT | Japan Science and Technology Agency (JST) JPMJER1303MEXT | Japan Society for the Promotion of Science (JSPS) 15H01478MEXT | Japan Society for the Promotion of Science (JSPS) 18H04810: S.KMEXT | Japan Society for the Promotion of Science (JSPS) 18K15409Uehara Memorial Foundation na
6 · The paper itself

Abstract

During thymic negative selection, autoreactive thymocytes carrying T cell receptor (TCR) with overtly strong affinity to self-MHC/self-peptide are removed by Bim-dependent apoptosis, but how Bim is specifically regulated to link TCR activation and apoptosis induction is unclear. Here we identify a murine T cell-specific genomic enhancer E

Indexed as

AnimalsApoptosisAutoimmunityBcl-2-Like Protein 11CRISPR-Cas SystemsEnhancer Elements, GeneticFemaleGene Expression RegulationMaleMiceMice, Inbred C57BLMice, KnockoutModels, AnimalReceptors, Antigen, T-CellSignal TransductionThymocytesBcl2l11 protein, mouseBcl-2-Like Protein 11Receptors, Antigen, T-Cell

Identifiers

PMID31197149
PMCPMC6565714
OpenAlexW2949217118

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.