Evidence map›Paper›PMID 31197138›Full record

ArticleNature communications2019

Coherent diffractive imaging of microtubules using an X-ray laser.

Gisela Brändén, Greger Hammarin, Rajiv Harimoorthy, Alexander Johansson, David Arnlund, Erik Malmerberg, Anton Barty, Stefan Tångefjord, Peter Berntsen, Daniel P DePonte and 23 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  6. Ultra-Thin Flexible Encapsulating Materials for Soft Bio-Integrated Electronics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  7. Article
  8. Article
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  10. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 6 institutions in 5 countries.

Gisela BrändénDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden. gisela.branden@gu.se.
Greger HammarinDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.ORCID http://orcid.org/0000-0001-5037-6039
Rajiv HarimoorthyDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.
Alexander JohanssonDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.
David ArnlundDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.
Erik MalmerbergMolecular Biophysics and Integrated Bio-Imaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, 94720, Berkeley, CA, USA.
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Stefan TångefjordDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.
Peter BerntsenDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.
Daniel P DePonteLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Carolin SeuringCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0003-1000-0859
Thomas A WhiteCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Francesco StellatoCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Richard BeanCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Kenneth R BeyerleinCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-7701-4369
Leonard M G ChavasCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Holger FleckensteinCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Cornelius GatiCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Umesh GhoshdastiderInstitute of Molecular and Cell Biology, Biopolis, A*STAR (Agency for Science, Technology and Research), 138673, Singapore, Singapore.
Lars GumprechtCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Dominik OberthürCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
David PoppInstitute of Molecular and Cell Biology, Biopolis, A*STAR (Agency for Science, Technology and Research), 138673, Singapore, Singapore.
Marvin SeibertLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Thomas TilpCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Marc MesserschmidtLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Garth J WilliamsLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
N Duane LohDepartment of Physics, National University of Singapore, 117551, Singapore, Singapore.
Henry N ChapmanCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-4655-1743
Peter ZwartMolecular Biophysics and Integrated Bio-Imaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, 94720, Berkeley, CA, USA.
Mengning LiangCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607, Hamburg, Germany.
Sébastien BoutetLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Robert C RobinsonInstitute of Molecular and Cell Biology, Biopolis, A*STAR (Agency for Science, Technology and Research), 138673, Singapore, Singapore.
Richard NeutzeDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden. richard.neutze@gu.se.ORCID http://orcid.org/0000-0003-0986-6153
Universität Hamburg · DEUniversity of Gothenburg · SESLAC National Accelerator Laboratory · USAgency for Science, Technology and Research · SGLawrence Berkeley National Laboratory · USNational University of Singapore · SG

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
The Development of Computational Methods for Fluctuation Xray ScatteringR01GM109019 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI ZWART, PETRUS H · 2014 to 2018
$1.9M
Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) KAW 2012.0275Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) KAW 2012.0284Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) KAW 2014.0275NCRR NIH HHS P41 RR001209NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM109019Vetenskapsrådet (Swedish Research Council) 2015-00560
6 · The paper itself

Abstract

X-ray free electron lasers (XFELs) create new possibilities for structural studies of biological objects that extend beyond what is possible with synchrotron radiation. Serial femtosecond crystallography has allowed high-resolution structures to be determined from micro-meter sized crystals, whereas single particle coherent X-ray imaging requires development to extend the resolution beyond a few tens of nanometers. Here we describe an intermediate approach: the XFEL imaging of biological assemblies with helical symmetry. We collected X-ray scattering images from samples of microtubules injected across an XFEL beam using a liquid microjet, sorted these images into class averages, merged these data into a diffraction pattern extending to 2 nm resolution, and reconstructed these data into a projection image of the microtubule. Details such as the 4 nm tubulin monomer became visible in this reconstruction. These results illustrate the potential of single-molecule X-ray imaging of biological assembles with helical symmetry at room temperature.

Indexed as

ElectronsLasersAlgorithmsCrystallography, X-RayImage Processing, Computer-AssistedMicrotubulesMolecular ImagingScattering, RadiationSynchrotronsTubulinX-RaysTubulin

Identifiers

PMID31197138
PMCPMC6565740
OpenAlexW2953027528

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.