Evidence map›Paper›PMID 31196165›Full record

ArticleHuman genomics2019

Genome-wide enriched pathway analysis of acute post-radiotherapy pain in breast cancer patients: a prospective cohort study.

Eunkyung Lee, Cristiane Takita, Jean L Wright, Susan H Slifer, Eden R Martin, James J Urbanic, Carl D Langefeld, Glenn J Lesser, Edward G Shaw, Jennifer J Hu

Open access · goldAbstract read
In one paragraph

Article in Human genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Enterochromaffin Cells: Sentinels to Gut Microbiota in Hyperalgesia?Frontiers in cellular and infection microbiology · 2021
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Personalized Medicine in Cancer Pain Management.Journal of personalized medicine · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Eunkyung LeeDepartment of Health Sciences, University of Central Florida College of Health Professions and Sciences, Orlando, FL, 32816, USA. eunkyung.lee@ucf.edu.ORCID 0000-0003-1732-5998
Cristiane TakitaSylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Jean L WrightDepartment of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University, Baltimore, MD, 21231, USA.
Susan H SliferThe Center for Genetic Epidemiology and Statistical Genetics, Joph P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
Eden R MartinThe Center for Genetic Epidemiology and Statistical Genetics, Joph P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.
James J UrbanicWake Forest NCORP Research Base, Winston-Salem, NC, 27157, USA.
Carl D LangefeldWake Forest NCORP Research Base, Winston-Salem, NC, 27157, USA.
Glenn J LesserWake Forest NCORP Research Base, Winston-Salem, NC, 27157, USA.
Edward G ShawWake Forest NCORP Research Base, Winston-Salem, NC, 27157, USA.
Jennifer J HuDepartment of Public Health Sciences, University of Miami Miller School of Medicine, Miami, FL, 33136, USA. jhu@med.miami.edu.
University of Miami · USWake Forest University · USJohns Hopkins University · USUniversity of Central Florida · US

Funding

Impact of Genomics on Disparities in Breast Cancer RadiosensitivityR01CA135288 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI HU, JENNIFER J · 2010 to 2014
$2.8M
Oral Therapeutics for Viral MalignanciesR42CA081857 · NCI · GENE REGULATION LABORATORIES, INC. · PI FALLER, DOUGLAS V · 2002 to 2003
$747k
Metabolomics: Novel Strategies to Improve Breast Cancer Radiotherapy ResponsesR21CA234880 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI HU, JENNIFER J · 2019 to 2020
$482k
ORAL THERAPEUTICS FOR VIRAL MALIGNANCIESR41CA081857 · NCI · GENE REGULATION LABORATORIES, INC. · PI FALLER, DOUGLAS V · 1999 to 1999
–
NCI NIH HHS R01 CA135288NCI NIH HHS R21 CA234880NCI NIH HHS R41 CA081857NCI NIH HHS R42 CA081857NIH HHS CA135288NIH HHS U10CA081857
6 · The paper itself

Abstract

backgroundAdjuvant radiotherapy (RT) can increase the risk of developing pain; however, the molecular mechanisms of RT-related pain remain unclear. The current study aimed to identify susceptibility loci and enriched pathways for clinically relevant acute post-RT pain, defined as having moderate to severe pain (pain score ≥ 4) at the completion of RT.

methodsWe conducted a genome-wide association study (GWAS) with 1,344,832 single-nucleotide polymorphisms (SNPs), a gene-based analysis using PLINK set-based tests of 19,621 genes, and a functional enrichment analysis of a gene list of 875 genes with p < 0.05 using NIH DAVID functional annotation module with KEGG pathways and GO terms (n = 380) among 1112 breast cancer patients.

resultsAbout 29% of patients reported acute post-RT pain. None of SNPs nor genes reached genome-wide significant level. Four SNPs showed suggestive associations with post-RT pain; rs16970540 in RFFL or near the LIG3 gene (p = 1.7 × 10

conclusionsThis is the first GWAS suggesting that post-RT pain is a complex polygenic trait influenced by many biological processes and functions such as glucuronidation and olfactory receptor activities. If validated in larger populations, the results can provide biological targets for pain management to improve cancer patients' quality of life. Additionally, these genes can be further tested as predictive biomarkers for personalized pain management.

Indexed as

Genetic Predisposition to DiseaseAdultAgedAged, 80 and overATP-Binding Cassette, Sub-Family C ProteinsBreast NeoplasmsCalcium-Binding ProteinsCell Adhesion MoleculesDNA Ligase ATPFemaleGenome-Wide Association StudyHumansMiddle AgedPainPoly-ADP-Ribose Binding ProteinsPolymorphism, Single NucleotideABCC4 protein, humanATP-Binding Cassette, Sub-Family C ProteinsCalcium-Binding ProteinsCell Adhesion MoleculesDNA Ligase ATPEGFL6 protein, humanLIG3 protein, humanPoly-ADP-Ribose Binding ProteinsBreast cancerGenetic variantsPainPathway analysisRadiotherapy

Identifiers

PMID31196165
PMCPMC6567461
OpenAlexW2950013251

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.