ArticleBMC genomics2019
Comparative genomic analysis of Pectobacterium carotovorum subsp. brasiliense SX309 provides novel insights into its genetic and phenotypic features.
Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- Complete Genome Analysis ofGenes · 2026Article
- Quorum quenching, lactic acid bacteria and microencapsulation as emerging and promising strategies to mitigate tomato soft rot.Frontiers in plant science · 2026Review
- Pangenomics to understand prophage dynamics in theMicrobial genomics · 2025Article
- Microbiome shifts duringPeerJ · 2025Article
- Resin Acid Copper Salt, an Interesting Chemical Pesticide, Controls Rice Bacterial Leaf Blight by Regulating Bacterial Biofilm, Motility, and Extracellular Enzymes.Molecules (Basel, Switzerland) · 2024Article
- Antibiotic Resistance in Plant Pathogenic Bacteria: Recent Data and Environmental Impact of Unchecked Use and the Potential of Biocontrol Agents as an Eco-Friendly Alternative.Plants (Basel, Switzerland) · 2024Review
- Article
- Comparative genomic and transcriptome analyses of twoFrontiers in microbiology · 2024Article
- Genetic Diversity ofMicroorganisms · 2022Article
- Development of a Real-Time Quantitative PCR Assay for the Specific Detection ofMicroorganisms · 2022Article
- Genome Wide Analysis of the Potato Soft Rot Pathogen Pectobacterium carotovorum Strain ICMP 5702 to Predict Novel Insights into Its Genetic Features.The plant pathology journal · 2022Article
- Comparative Genomic Analysis of Pathogenic Factors of Pectobacterium Species Isolated in South Korea Using Whole-Genome Sequencing.The plant pathology journal · 2022Article
- The Type VI Secretion Systems in Plant-Beneficial Bacteria Modulate Prokaryotic and Eukaryotic Interactions in the Rhizosphere.Frontiers in microbiology · 2022Article
- Analysis of the Taxonomy, Synteny, and Virulence Factors for Soft Rot PathogenFrontiers in microbiology · 2022Article
- Comparative Genomic Analysis ofFrontiers in microbiology · 2022Article
- The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool.BMC genomics · 2021Article
- Biosensors Used for Epifluorescence and Confocal Laser Scanning Microscopies to StudyMicroorganisms · 2021Review
- Review
- Analysis of the Taxonomy and Pathogenic Factors ofFrontiers in microbiology · 2021Article
- Host Specificity and Differential Pathogenicity ofMicroorganisms · 2020Article
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7 authors.
Funding
Abstract
backgroundPectobacterium carotovorum subsp. brasiliense is a broad host range bacterial pathogen, which causes blackleg of potatoes and bacterial soft rot of vegetables worldwide. Production of plant cell wall degrading enzymes is usually critical for Pectobacterium infection. However, other virulence factors and the mechanisms of genetic adaptation still need to be studied in detail.
resultsIn this study, the complete genome of P. carotovorum subsp. brasiliense strain SX309 isolated from cucumber was compared with eight other pathogenic bacteria belonging to the Pectobacterium genus, which were isolated from various host plants. Genome comparison revealed that most virulence genes are highly conserved in the Pectobacterium strains, especially for the key virulence determinants involved in the biosynthesis of extracellular enzymes and others including the type II and III secretion systems, quorum sensing system, flagellar and chemotactic genes. Nevertheless, some variable regions of the T6SS and the CRISP-Cas immune system are unique for P. carotovorum subsp. brasiliense.
conclusionsThe extensive comparative genomics analysis revealed highly conserved virulence genes in the Pectobacterium strains. However, several variable regions of type VI secretion system and two subtype Cas mechanism-Cas immune systems possibly contribute to the process of Pectobacterium infection and adaptive immunity.
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