Evidence map›Paper›PMID 31194901›Full record

ArticleJournal of viral hepatitis2019

HIV co-infection is associated with increased transmission risk in patients with chronic hepatitis C virus.

Manon Ragonnet-Cronin, Reilly Hostager, Charlotte Hedskog, Ana Osinusi, Eugenia Svarovskaia, Joel O Wertheim

Open access · greenAbstract read
In one paragraph

Article in Journal of viral hepatitis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Manon Ragonnet-CroninDepartment of Medicine, University of California San Diego, San Diego, California, USA.
Reilly HostagerDepartment of Medicine, University of California San Diego, San Diego, California, USA.
Charlotte HedskogGilead Sciences, Foster City, California, USA.ORCID 0000-0003-0512-7767
Ana OsinusiGilead Sciences, Foster City, California, USA.
Eugenia SvarovskaiaGilead Sciences, Foster City, California, USA.
Joel O WertheimDepartment of Medicine, University of California San Diego, San Diego, California, USA.ORCID 0000-0003-4882-5856
Gilead Sciences (United States) · USUniversity of California San Diego · US

Funding

Next-Generation Phylodynamics-targeted Partner Service Models for Combined HIV PreventionR01AI136056 · NIAID · UNIVERSITY OF CHICAGO · PI BENBOW, NANETTE DIOR, D'AQUILA, RICHARD · 2018 to 2022
$4.0M
Automation and Evaluation of Real-Time Transmission Network-Based HIV Prevention Services in New York CityR01AI135992 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WERTHEIM, JOEL OKRENT · 2018 to 2022
$3.6M
Public Health Implications of HIV Transmission NetworksK01AI110181 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WERTHEIM, JOEL OKRENT · 2014 to 2018
$668k
Medical Research Council MR/R015600/1NIAID NIH HHS K01 AI110181NIAID NIH HHS R01 AI135992NIAID NIH HHS R01 AI136056
6 · The paper itself

Abstract

Molecular epidemiological analysis of viral pathogens can identify factors associated with increased transmission risk. We investigated the frequency of genetic clustering in a large data set of NS34A, NS5A, and NS5B viral sequences from patients with chronic hepatitis C virus (HCV). Within a subset of patients with longitudinal samples, Receiver Operator Characteristic (ROC) analysis was applied which identified a threshold of 0.02 substitutions/site as most appropriate for clustering. From the 7457 patients with chronic HCV infection included in this analysis, we inferred 256 clusters comprising 541 patients (7.3%). We found that HCV/HIV co-infection, young age, and high HCV viral load were all associated with increased clustering frequency, an indicator of increased transmission risk. In light of previous work on HCV/HIV co-infection in acute HCV cohorts, our results suggest that patients with HCV/HIV co-infection may disproportionately be the source of new HCV infections and treatment efforts should be geared towards viral elimination in this vulnerable population.

Indexed as

HepacivirusAdolescentAdultAgedChildCluster AnalysisCoinfectionFemaleGenotypeHepatitis C, ChronicHIV InfectionsHumansMaleMiddle AgedRNA, ViralViral LoadRNA, Viralco-infectionevolutionhepatitis C virushuman immunodeficiency virustransmission cluster

Identifiers

PMID31194901
PMCPMC6800583
OpenAlexW2949854592

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.