Evidence map›Paper›PMID 31192319›Full record

ArticleThe Analyst2019

Integrating comprehensive two-dimensional gas chromatography mass spectrometry and parallel two-dimensional liquid chromatography mass spectrometry for untargeted metabolomics.

Md Aminul Islam Prodhan, Biyun Shi, Ming Song, Liqing He, Fang Yuan, Xinmin Yin, Patrick Bohman, Craig J McClain, Xiang Zhang

Abstract read
In one paragraph

Article in The Analyst, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Applications of chromatographic methods in metabolomics: A review.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2024
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
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  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Md Aminul Islam ProdhanDepartment of Chemistry, University of Louisville, Louisville, KY 40208, USA. xiang.zhang@louisville.edu and University of Louisville Alcohol Research Center, University of Louisville, Louisville, KY 40208, USA and University of Louisville Hepatobiology & Toxicology Program, University of Louisville, Louisville, KY 40208, USA and Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY 40208, USA.ORCID http://orcid.org/0000-0002-8707-0049
Biyun ShiDepartment of Chemistry, University of Louisville, Louisville, KY 40208, USA. xiang.zhang@louisville.edu and Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY 40208, USA.
Ming SongUniversity of Louisville Alcohol Research Center, University of Louisville, Louisville, KY 40208, USA and University of Louisville Hepatobiology & Toxicology Program, University of Louisville, Louisville, KY 40208, USA and Department of Medicine, University of Louisville, Louisville, KY 40208, USA.
Liqing HeDepartment of Chemistry, University of Louisville, Louisville, KY 40208, USA. xiang.zhang@louisville.edu and University of Louisville Alcohol Research Center, University of Louisville, Louisville, KY 40208, USA and University of Louisville Hepatobiology & Toxicology Program, University of Louisville, Louisville, KY 40208, USA and Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY 40208, USA.
Fang YuanDepartment of Chemistry, University of Louisville, Louisville, KY 40208, USA. xiang.zhang@louisville.edu and University of Louisville Alcohol Research Center, University of Louisville, Louisville, KY 40208, USA and University of Louisville Hepatobiology & Toxicology Program, University of Louisville, Louisville, KY 40208, USA and Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY 40208, USA.
Xinmin YinDepartment of Chemistry, University of Louisville, Louisville, KY 40208, USA. xiang.zhang@louisville.edu and Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY 40208, USA.
Patrick BohmanThermo Fisher Scientific International Inc., 3000 Lakeside Dr., Bannockburn, IL 60015, USA.
Craig J McClainUniversity of Louisville Alcohol Research Center, University of Louisville, Louisville, KY 40208, USA and University of Louisville Hepatobiology & Toxicology Program, University of Louisville, Louisville, KY 40208, USA and Department of Medicine, University of Louisville, Louisville, KY 40208, USA and Department of Pharmacology & Toxicology, University of Louisville, Louisville, KY 40208, USA and Robley Rex Louisville VAMC, Louisville, Kentucky 40292, USA.
Xiang ZhangDepartment of Chemistry, University of Louisville, Louisville, KY 40208, USA. xiang.zhang@louisville.edu and University of Louisville Alcohol Research Center, University of Louisville, Louisville, KY 40208, USA and University of Louisville Hepatobiology & Toxicology Program, University of Louisville, Louisville, KY 40208, USA and Center for Regulatory and Environmental Analytical Metabolomics, University of Louisville, Louisville, KY 40208, USA and Department of Pharmacology & Toxicology, University of Louisville, Louisville, KY 40208, USA.ORCID http://orcid.org/0000-0003-1102-6313

Funding

Role of oxidized linoleic acid metabolites in the pathogenesis of alcoholic liver diseaseP20GM113226 · NIGMS · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2016 to 2025
$24.1M
The Role of Nutrition in the Development/Progression of Alcohol-Induced Organ InjuryP50AA024337 · NIAAA · UNIVERSITY OF LOUISVILLE · PI CRAIG J. MCCLAIN · 2016 to 2026
$17.9M
Novel Therapies for Alcoholic HepatitisU01AA021893 · NIAAA · CLEVELAND CLINIC LERNER COM-CWRU · PI MCCLAIN, CRAIG J., MCCULLOUGH, ARTHUR JOSEPH · 2012 to 2017
$6.0M
Oxidized Metabolites of Linoleic Acid in Alcohol-induced Liver InjuryU01AA022489 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FELDSTEIN, ARIEL, MCCLAIN, CRAIG J. · 2014 to 2018
$1.7M
Mechanisms for alcohol induced gut barrier dysfunction in ALDR01AA023681 · NIAAA · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2014 to 2018
$1.6M
Novel therapies in alcoholic hepatitis University of LouisvilleU01AA021901 · NIAAA · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2012 to 2017
$1.5M
Ultra Performance Liquid Chromatography High Resolution High Mass Accuracy Mass SpectrometerS10OD020106 · OD · UNIVERSITY OF LOUISVILLE · PI ZHANG, XIANG · 2015 to 2015
$600k
Dietary Fat and Alcoholic Liver DiseaseI01BX002996 · VA · LOUISVILLE VA MEDICAL MEDICAL CENTER · PI MCCLAIN, CRAIG J. · 2017 to 2020
–
BLRD VA I01 BX002996NIAAA NIH HHS P50 AA024337NIAAA NIH HHS R01 AA023681NIAAA NIH HHS U01 AA021893NIAAA NIH HHS U01 AA021901NIAAA NIH HHS U01 AA022489NIGMS NIH HHS P20 GM113226NIH HHS S10 OD020106
6 · The paper itself

Abstract

The diverse characteristics and large number of entities make metabolite separation challenging in metabolomics. To date, there is not a singular instrument capable of analyzing all types of metabolites. In order to achieve a better separation for higher peak capacity and accurate metabolite identification and quantification, we integrated GC × GC-MS and parallel 2DLC-MS for analysis of polar metabolites. To test the performance of the developed system, 13 rats were fed different diets to form two animal groups. Polar metabolites extracted from rat livers were analyzed by GC × GC-MS, parallel 2DLC-MS (-) and parallel 2DLC-MS (+), respectively. By integrating all data together, 58 metabolites were detected with significant change in their abundance levels between groups (p≤ 0.05). Of the 58 metabolites, three metabolites were detected in two platforms and two in all three platforms. Manual examination showed that discrepancy of metabolite regulation measured by different platforms was mainly caused by the poor shape of chromatographic peaks resulting from low instrument response. Pathway analysis demonstrated that integrating the results from multiple platforms increased the confidence of metabolic pathway assignment.

Indexed as

MetabolomeAnimalsChromatography, LiquidDietGas Chromatography-Mass SpectrometryLiverMaleMetabolomicsRats, Sprague-Dawley

Identifiers

PMID31192319
PMCPMC6677244

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.