Evidence map›Paper›PMID 31192206›Full record

ArticleFrontiers in cell and developmental biology2019

Single-Cell Fluorescence Analysis of Pseudotemporal Ordered Cells Provides Protein Expression Dynamics for Neuronal Differentiation.

Zhichao Song, Alejandra S Laureano, Kishan Patel, Sylvia Yip, Azadeh Jadali, Kelvin Y Kwan

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Zhichao SongDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, United States.
Alejandra S LaureanoDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, United States.
Kishan PatelDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, United States.
Sylvia YipDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, United States.
Azadeh JadaliDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, United States.
Kelvin Y KwanDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, United States.
Rutgers, The State University of New Jersey · US

Funding

UMDNJ-RUTGERS UNIVERSITY PIPELINE PROGRAMR25GM055145 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HAIMOVICH, BEATRICE, LANGER, JEROME ALAN · 1996 to 2020
$8.7M
Machine learning-enabled Comparative Transcriptomic Profiling to Validate NanoScript-induced Inner Ear Hair CellsR01DC016612 · NIDCD · RUTGERS, THE STATE UNIV OF N.J. · PI KWAN, KELVIN Y., LEE, KIBUM · 2018 to 2022
$2.8M
The role of transcription factors and chromatin remodeling proteins in spiral ganglion neuron regenerationR01DC015000 · NIDCD · RUTGERS, THE STATE UNIV OF N.J. · PI KWAN, KELVIN Y. · 2016 to 2020
$2.0M
Role of shox2 in zebrafish otic neuron developmentF31DC016239 · NIDCD · RUTGERS, THE STATE UNIV OF N.J. · PI LAUREANO RUIZ, ALEJANDRA SOFIA · 2017 to 2019
$106k
NIDCD NIH HHS F31 DC016239NIDCD NIH HHS R01 DC015000NIDCD NIH HHS R01 DC016612NIGMS NIH HHS R25 GM055145
6 · The paper itself

Abstract

Stem cell replacement therapy is a potential method for repopulating lost spiral ganglion neurons (SGNs) in the inner ear. Efficacy of cell replacement relies on proper differentiation. Defining the dynamic expression of different transcription factors essential for neuronal differentiation allows us to monitor the progress and determine when the protein functions in differentiating stem cell cultures. Using immortalized multipotent otic progenitors (iMOPs) as a cellular system for SGN differentiation, a method for determining dynamic protein expression from heterogeneous cultures was developed. iMOP-derived neurons were identified and ordered by increasing neurite lengths to create a pseudotime course that reflects the differentiation trajectory. The fluorescence intensities of transcription factors SOX2 and NEUROD1 from individual pseudotemporally ordered cells were measured. Individual cells were grouped by K-means clustering and the mean fluorescence intensity for each cluster determined. Curve fit of the mean fluorescence represented the protein expression dynamics in differentiating cells. The method provides information about protein expression dynamics in differentiating stem cell cultures.

Indexed as

differentiationinner earregenerationspiral ganglion neuronstem cell

Identifiers

PMID31192206
PMCPMC6549217
OpenAlexW2947417628

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.