Evidence map›Paper›PMID 31192117›Full record

ArticleFrontiers in oncology2019

Increased Levels of Genomic Instability and Mutations in Homologous Recombination Genes in Locally Advanced Rectal Carcinomas.

Luisa Matos do Canto, Simon J Larsen, Bruna E Catin Kupper, Maria Dirlei Ferreira de Souza Begnami, Cristóvam Scapulatempo-Neto, Annabeth Høgh Petersen, Mads M Aagaard, Jan Baumbach, Samuel Aguiar, Silvia R Rogatto

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Luisa Matos do CantoInternational Research Center-Center for International Private Enterprise (CIPE), A. C. Camargo Cancer Center, São Paulo, Brazil.
Simon J LarsenDepartment of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark.
Bruna E Catin KupperDepartment of Pelvic Surgery, A. C. Camargo Cancer Center, São Paulo, Brazil.
Maria Dirlei Ferreira de Souza BegnamiDepartment of Pathology, A. C. Camargo Cancer Center, São Paulo, Brazil.
Cristóvam Scapulatempo-NetoMolecular Oncology Research Center, Barretos, Brazil.
Annabeth Høgh PetersenDepartment of Clinical Genetics, Vejle Hospital, Vejle, Denmark.
Mads M AagaardDepartment of Clinical Genetics, Vejle Hospital, Vejle, Denmark.
Jan BaumbachTUM School of Life Sciences Weihenstephan, Technical University of Munich (TUM), Freising, Germany.
Samuel AguiarDepartment of Pelvic Surgery, A. C. Camargo Cancer Center, São Paulo, Brazil.
Silvia R RogattoDepartment of Clinical Genetics, Vejle Hospital, Vejle, Denmark.
AC Camargo Hospital · BRVejle Sygehus · DKUniversity of Southern Denmark · DKHospital de Câncer de Barretos · BRTechnical University of Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pre-operative 5-fluoracil-based chemoradiotherapy (nCRT) is the standard treatment for patients with locally advanced rectal cancer (LARC). Patients with pathological complete response (pCR-0% of tumor cells in the surgical specimen after nCRT) have better overall survival and lower risk of recurrence in comparison with incomplete responders (pIR). Predictive biomarkers to be used for new therapeutic strategies and capable of stratifying patients to avoid overtreatment are needed. We evaluated the genomic profiles of 33 pre-treatment LARC biopsies using SNP array and targeted-next generation sequencing (tNGS). Based on the large number of identified genomic alterations, we calculated the genomic instability index (GII) and three homologous recombination deficiency (HRD) scores, which have been reported as impaired DNA repair markers. We observed high GII in our LARC cases, which was confirmed in 165 rectal cancer cases from TCGA. Patients with pCR presented higher GII compared with pIR. Moreover, a negative correlation between GII and the fraction of tumor cells remaining after surgery was observed (ρ = -0.382,

Indexed as

DNA copy number changesDNA repair deficiencygenomic instabilityneoadjuvant therapyrectal cancer

Identifiers

PMID31192117
PMCPMC6527873
OpenAlexW2944867239

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.