ArticleFrontiers in genetics2019
Whole Genome Linkage Disequilibrium and Effective Population Size in a Coho Salmon (
Article in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
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- Development and validation of a 70K SNP genotyping array for Atlantic halibut (Hippoglossus hippoglossus).BMC genomics · 2025Article
- Whole-Genome Resequencing Provides Novel Insights Into the Genetic Diversity, Population Structure, and Patterns of Runs of Homozygosity in Mud Crab (Evolutionary applications · 2025Article
- Genomic predictions under different genetic architectures are impacted by mating designs.Veterinary and animal science · 2024Article
- Estimation of effective number of breeders and effective population size in an abundant and heavily exploited marine teleost.Evolutionary applications · 2024Article
- Population-size history inferences from the coho salmon (Oncorhynchus kisutch) genome.G3 (Bethesda, Md.) · 2023Article
- Insight into selective breeding for robustness based on field survival records: New genetic evaluation of survival traits in pacific white shrimp (Frontiers in genetics · 2022Article
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- Phylogeographical Pattern and Population Evolution History of IndigenousFrontiers in plant science · 2022Article
- Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping.Frontiers in genetics · 2022Article
- Estimates of recent and historical effective population size in turbot, seabream, seabass and carp selective breeding programmes.Genetics, selection, evolution : GSE · 2021Article
- Development of a multi-species SNP array for serrasalmid fish Colossoma macropomum and Piaractus mesopotamicus.Scientific reports · 2021Article
- Detection of selection signatures in farmed coho salmon (Oncorhynchus kisutch) using dense genome-wide information.Scientific reports · 2021Article
- Optimum mating designs for exploiting dominance in genomic selection schemes for aquaculture species.Genetics, selection, evolution : GSE · 2021Article
- Marker genotyping error effects on genomic predictions under different genetic architectures.Molecular genetics and genomics : MGG · 2021Article
- Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Frontiers in genetics · 2021Article
- The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle.PloS one · 2021Article
- A Likelihood Approach for Uncovering Selective Sweep Signatures from Haplotype Data.Molecular biology and evolution · 2020Article
- Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr (G3 (Bethesda, Md.) · 2020Article
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The estimation of linkage disequilibrium between molecular markers within a population is critical when establishing the minimum number of markers required for association studies, genomic selection, and inferring historical events influencing different populations. This work aimed to evaluate the extent and decay of linkage disequilibrium in a coho salmon breeding population using a high-density SNP array. Linkage disequilibrium was estimated between a total of 93,502 SNPs found in 64 individuals (33 dams and 31 sires) from the breeding population. The markers encompass all 30 coho salmon chromosomes and comprise 1,684.62 Mb of the genome. The average density of markers per chromosome ranged from 48.31 to 66 per 1 Mb. The minor allele frequency averaged 0.26 (with a range from 0.22 to 0.27). The overall average linkage disequilibrium among SNPs pairs measured as
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