Evidence map›Paper›PMID 31189768›Full record

ArticleMicrobes and environments2019

An Aggregation-defective Mutant of Methanothermobacter sp. CaT2 Reveals Unique Protein-dependent Aggregation.

Kana Sumikawa, Tomoyuki Kosaka, Noriaki Mayahara, Minenosuke Matsutani, Koichi Udo, Mamoru Yamada

Open access · diamondAbstract read
In one paragraph

Article in Microbes and environments, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. A global survey of intramolecular isopeptide bonds.Protein science : a publication of the Protein Society · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Mechanisms of microbial co-aggregation in mixed anaerobic cultures.Applied microbiology and biotechnology · 2024
    Review
  6. Phenotypic and genomic characterization ofApplied and environmental microbiology · 2024
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kana SumikawaApplied Molecular Bioscience, Graduates School of Medicine, Yamaguchi University.
Tomoyuki KosakaDepartment of Biological Chemistry, College of Agriculture, Graduates School of Science and Technology for Innovation, Yamaguchi University.
Noriaki MayaharaApplied Molecular Bioscience, Graduates School of Medicine, Yamaguchi University.
Minenosuke MatsutaniDepartment of Biological Chemistry, College of Agriculture, Graduates School of Science and Technology for Innovation, Yamaguchi University.
Koichi UdoScience Research Center, Yamaguchi University.
Mamoru YamadaApplied Molecular Bioscience, Graduates School of Medicine, Yamaguchi University.
Yamaguchi University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The thermophilic hydrogenotrophic methanogen, Methanothermobacter sp. CaT2, which possesses an extracellular sugar layer, commonly aggregates by itself or with other microorganisms. To elucidate the molecular mechanisms responsible for this aggregation, the aggregation-defective mutant, CLA160, was isolated. Optical and electron microscopy observations revealed that the mutant exhibited a significant reduction in aggregation. Genomic sequencing showed that CLA160 has a single point mutation, causing a nonsense mutation in MTCT_1020, which encodes a hypothetical protein. Motif and domain analyses indicated that the hypothetical protein bears two membrane-spanning segments at the N- and C-terminal regions and a large middle repeat-containing region. The results of a bioinformatic analysis suggested that the first middle region (RII) of the protein or the whole structure is responsible for the function of the product of MTCT_1020 in the aggregation of CaT2. A treatment with proteinase K suppressed sedimentation in CaT2, indicating a reduction in aggregation, with almost no effect on sedimentation in CLA160. The addition of Ca

Indexed as

Bacterial AdhesionBacterial ProteinsCations, DivalentEndopeptidase KGenome, BacterialHot TemperatureMethaneMethanobacteriaceaeMutationPhylogenyProtein DomainsSequence Analysis, DNABacterial ProteinsCations, DivalentEndopeptidase KMethaneadhesion proteinaggregationaggregation-defective mutantgenomic analysishydrogenotrophic methanogen

Identifiers

PMID31189768
PMCPMC6759345
OpenAlexW2951788990

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.