Evidence map›Paper›PMID 31189705›Full record

ArticleJournal of virology2019

Tissue-Specific Gene Expression during Productive Human Papillomavirus 16 Infection of Cervical, Foreskin, and Tonsil Epithelium.

Sreejata Chatterjee, Sa Do Kang, Samina Alam, Anna C Salzberg, Janice Milici, Sjoerd H van der Burg, Willard Freeman, Craig Meyers

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

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  13. Cytokeratin 7 and 19 expression in oropharyngeal and oral squamous cell carcinoma.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Sreejata ChatterjeeDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Sa Do KangDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.ORCID 0000-0001-9481-9823
Samina AlamDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Anna C SalzbergBioinformatics Core, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Janice MiliciDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Sjoerd H van der BurgDepartment of Medical Oncology, Leiden University Medical Center, Leiden, The Netherlands.
Willard FreemanUniversity of Oklahoma Health Science Center, Oklahoma City, Oklahoma, USA.
Craig MeyersDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA cmeyers@pennstatehealth.psu.edu.
Penn State Milton S. Hershey Medical Center · USLeiden University Medical Center · NLPennsylvania State University · USUniversity of Oklahoma Health Sciences Center · US

Funding

ART On Oral Tissue Growth, Function, and HPV InfectionsR01DE018305 · NIDCR · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MEYERS, CRAIG M · 2007 to 2011
$2.1M
NIDCR NIH HHS R01 DE018305
6 · The paper itself

Abstract

Epidemiological data confirm a much higher incidence of high-risk human papillomavirus 16 (HPV16)-mediated carcinogenesis of the cervical epithelium than for other target sites. In order to elucidate tissue-specific responses to virus infection, we compared gene expression changes induced by productive HPV16 infection of cervical, foreskin, and tonsil organotypic rafts. These rafts closely mimic persistent HPV16 infection, long before carcinogenesis sets in. The total number of gene expression changes varied considerably across the tissue types, with only 32 genes being regulated in common. Among them, we confirmed the Kelch-like family protein KLHL35 and the laminin-5 complex to be upregulated and downregulated, respectively, in all the three tissues. HPV16 infection induces upregulation of genes involved in cell cycle control, cell division, mitosis, DNA replication, and DNA damage repair in all the three tissues, indicative of a hyperproliferative environment. In the cervical and tonsil epithelium, we observe significant downregulation of genes involved in epidermis development, keratinocyte differentiation, and extracellular matrix organization. On the other hand, in HPV16-positive foreskin (HPV16 foreskin) tissue, several genes involved in interferon-mediated innate immunity, cytokine signaling, and cellular defenses were downregulated. Furthermore, pathway analysis and experimental validations identified important cellular pathways like STAT1 and transforming growth factor β (TGF-β) to be differentially regulated among the three tissue types. The differential modulation of important cellular pathways like TGF-β1 and STAT1 can explain the sensitivity of tissues to HPV cancer progression.

Indexed as

Cell DifferentiationCell Line, TumorCervix UteriFemaleForeskinGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHuman papillomavirus 16HumansKeratinocytesMaleMicroarray AnalysisOrgan SpecificityPalatine TonsilPapillomavirus Infectionsepithelial differentiationgene expressionHPV16human papillomavirusimmune responsetissue specific

Identifiers

PMID31189705
PMCPMC6694821
OpenAlexW2951608453

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.