Evidence map›Paper›PMID 31189604›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

The tilted helix model of dynamin oligomers.

Avihay Kadosh, Adai Colom, Ben Yellin, Aurélien Roux, Tom Shemesh

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Nanoscale dynamics of Dynamin 1 helices reveals squeeze-twist deformation mode critical for membrane fission.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Modeling membrane reshaping driven by dynamic protein assemblies.Current opinion in structural biology · 2023
    Review
  4. Article
  5. Quantification and demonstration of the collective constriction-by-ratchet mechanism in the dynamin molecular motor.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Avihay KadoshFaculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Adai ColomDepartment of Biochemistry, University of Geneva, CH-1211 Geneva, Switzerland.
Ben YellinFaculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Aurélien RouxDepartment of Biochemistry, University of Geneva, CH-1211 Geneva, Switzerland.ORCID 0000-0002-6088-0711
Tom ShemeshFaculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel; tomsh@technion.ac.il.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dynamin proteins assemble into characteristic helical structures around necks of clathrin-coated membrane buds. Hydrolysis of dynamin-bound GTP results in both fission of the membrane neck and partial disruption of the dynamin oligomer. Imaging by atomic force microscopy reveals that, on GTP hydrolysis, dynamin oligomers undergo a dynamic remodeling and lose their distinctive helical shape. While breakup of the dynamin helix is a critical stage in clathrin-mediated endocytosis, the mechanism for this remodeling of the oligomer has not been resolved. In this paper, we formulate an analytical, elasticity-based model for the reshaping and disassembly of the dynamin scaffold. We predict that the shape of the oligomer is modulated by the orientation of dynamin's pleckstrin homology (PH) domain relative to the underlying membrane. Our results indicate that tilt of the PH domain drives deformation and fragmentation of the oligomer, in agreement with experimental observations. This model motivated the introduction of the tilted helix: a curve that maintains a fixed angle between its normal and the normal of the embedding surface. Our findings highlight the importance of tilt as a key regulator of size and morphology of membrane-bound oligomers.

Indexed as

DynaminsElasticityLipid BilayersMolecular Dynamics SimulationPleckstrin Homology DomainsProtein Conformation, alpha-HelicalProtein SubunitsDynaminsLipid BilayersProtein Subunitsdynaminlipid membraneprotein oligomerizationtilt

Identifiers

PMID31189604
PMCPMC6601248

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.