Evidence map›Paper›PMID 31188443›Full record

ArticleNucleic acids research2019

A DEAD-box protein regulates ribosome assembly through control of ribosomal protein synthesis.

Isabelle Iost, Chaitanya Jain

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Role of DEAD/DEAH-box helicases in immunity, infection and cancers.Cell communication and signaling : CCS · 2025
    Review
  2. Article
  3. Frontiers in microbiology · 2025
    Article
  4. Review
  5. Extraribosomal Functions of Bacterial Ribosomal Proteins-An Update, 2023.International journal of molecular sciences · 2024
    Review
  6. Article
  7. SrmB Rescues Trapped Ribosome Assembly Intermediates.Journal of molecular biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Isabelle IostARNA Laboratory, INSERM U1212, CNRS UMR 5320, Université de Bordeaux, France.
Chaitanya JainDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Inserm · FRUniversity of Miami · US

Funding

Regulation of Messenger RNA by DEAD-box ProteinsR01GM114540 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI JAIN, CHAITANYA · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM114540
6 · The paper itself

Abstract

DEAD-box proteins (DBPs) comprise a large family of proteins that most commonly have been identified as regulators of ribosome assembly. The Escherichia coli DBP, SrmB, represents a model bacterial DBP whose absence impairs formation of the large ribosomal subunit (LSU). To define the basis for SrmB function, suppressors of the ribosomal defect of ΔsrmB strains were isolated. The major class of suppressors was found to map to the 5' untranslated region (UTR) of the rplM-rpsI operon, which encodes the ribosomal proteins (r-proteins) L13 and S9. An analysis of protein abundance indicated that both r-proteins are under-produced in the ΔsrmB strain, but are increased in these suppressors, implicating r-protein underproduction as the molecular basis for the observed ribosomal defects. Reduced r-protein synthesis was determined to be caused by intrinsic transcription termination within the rplM 5' UTR that is abrogated by SrmB. These results reveal a specific mechanism for DBP regulation of ribosomal assembly, indirectly mediated through its effects on r-protein expression.

Indexed as

Mutation5' Untranslated RegionsBase SequenceDEAD-box RNA HelicasesEscherichia coli ProteinsGene Expression Regulation, BacterialNucleic Acid ConformationOperonProtein BiosynthesisRibosomal ProteinsRibosomesRNA, RibosomalTranscription, Genetic5' Untranslated RegionsDEAD-box RNA HelicasesEscherichia coli ProteinsRibosomal ProteinsRNA, RibosomalSrmB protein, E coli

Identifiers

PMID31188443
PMCPMC6736130
OpenAlexW2951219925

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.