Evidence map›Paper›PMID 31187248›Full record

ArticleMikrochimica acta2019

Nucleic acid lateral flow assays using a conjugate of a DNA binding protein and carbon nanoparticles.

Gülsen Betül Aktas, Jan H Wichers, Vasso Skouridou, Aart van Amerongen, Lluis Masip

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Mikrochimica acta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Magnetic Lateral Flow Immunoassays.Diagnostics (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Gülsen Betül AktasInterfibio, Bioengineering and Bioelectrochemistry Group, Departament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007, Tarragona, Spain.
Jan H WichersBioSensing & Diagnostics, Wageningen Food & Biobased Research, Wageningen University & Research, Bornse Weilanden 9, 6708, WG, Wageningen, The Netherlands.
Vasso SkouridouInterfibio, Bioengineering and Bioelectrochemistry Group, Departament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007, Tarragona, Spain.
Aart van AmerongenBioSensing & Diagnostics, Wageningen Food & Biobased Research, Wageningen University & Research, Bornse Weilanden 9, 6708, WG, Wageningen, The Netherlands. aart.vanamerongen@wur.nl.
Lluis MasipInterfibio, Bioengineering and Bioelectrochemistry Group, Departament d'Enginyeria Química, Universitat Rovira i Virgili, 26 Països Catalans, 43007, Tarragona, Spain. lluis.masip@urv.cat.ORCID 0000-0002-3938-4633
Universitat Rovira i Virgili · ESWageningen University & Research · NL

Funding

European Molecular Biology Organization ASTF 84-2016FP7 People: Marie-Curie Actions PICIG09-GA-2011-294046
6 · The paper itself

Abstract

Nucleic acid lateral flow assays (NALFA) are often performed with gold nanoparticles. These are typically associated with ligand-labeled PCR amplicons via affinity interactions of adsorbed/conjugated proteins. Otherwise, they are conjugated to specific ssDNA sequences that hybridize to the target sequence. To avoid the need to generate ssDNA and to reduce the costs associated with primer labeling and antibody use, NALFA assays were developed that allow the direct detection of PCR amplicons using conjugates of a DNA binding protein with carbon nanoparticles (CNPs). The target gene encoding 16S ribosomal RNA of Escherichia coli was amplified by PCR using a single fluorophore-labeled forward primer and a reverse primer extended with the binding sequence of the bacteriophage lambda Cro repressor protein. Three different detection approaches were evaluated: (a) scCro/CNPs conjugate (black color), (b) HRP-scCro enzyme conjugate (red color), and (c) HRP-scCro/CNPs conjugate for dual color development. The limits of detection were between 6.9 and 10.4 ng of PCR product for all three approaches. These correspond to 3.0 to 4.5 × 10

Indexed as

ArmoraciaBacteriophage lambdaCarbonDNA, BacterialDNA-Binding ProteinsEscherichia coli O157Horseradish PeroxidaseLimit of DetectionNanoparticlesPoint-of-Care TestingPolymerase Chain ReactionRepressor ProteinsRNA, Ribosomal, 16SViral Regulatory and Accessory ProteinsCarbonDNA, BacterialDNA-Binding ProteinsHorseradish Peroxidasephage repressor proteinsRepressor ProteinsRNA, Ribosomal, 16SViral Regulatory and Accessory ProteinsEnzyme conjugateEscherichia coliImmunochromatographic testNucleic acid lateral flow assaySignal enhancementSingle-chain Cro

Identifiers

PMID31187248
OpenAlexW2953353226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.