Evidence map›Paper›PMID 31186438›Full record

ArticleScientific reports2019

Genome-wide identification and characterization of long non-coding RNAs expressed during sheep fetal and postnatal hair follicle development.

Ablat Sulayman, Kechuan Tian, Xixia Huang, Yuezhen Tian, Xinming Xu, Xuefeng Fu, Bingru Zhao, Weiwei Wu, Dan Wang, Aynur Yasin and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 68 citations in OpenAlex.

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  10. Molecular Genetic Characteristics of theInternational journal of molecular sciences · 2024
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  15. Genes · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Ablat SulaymanCollege of Animal Science, Xinjiang Agricultural University, Xinjiang, Republic of China.
Kechuan TianInstitute of Animal Husbandry, Xinjiang Academy of Animal Science, Xinjiang, Republic of China. tiankechuan@163.com.
Xixia HuangCollege of Animal Science, Xinjiang Agricultural University, Xinjiang, Republic of China. au-huangxixia@163.com.
Yuezhen TianInstitute of Animal Husbandry, Xinjiang Academy of Animal Science, Xinjiang, Republic of China.
Xinming XuInstitute of Animal Husbandry, Xinjiang Academy of Animal Science, Xinjiang, Republic of China.
Xuefeng FuInstitute of Animal Husbandry, Xinjiang Academy of Animal Science, Xinjiang, Republic of China.
Bingru ZhaoCollege of Animal Science, Xinjiang Agricultural University, Xinjiang, Republic of China.
Weiwei WuInstitute of Animal Husbandry, Xinjiang Academy of Animal Science, Xinjiang, Republic of China.
Dan WangCollege of Animal Science, Xinjiang Agricultural University, Xinjiang, Republic of China.
Aynur YasinInstitute of Animal Husbandry, Xinjiang Academy of Animal Science, Xinjiang, Republic of China.
Hanikezi TulafuInstitute of Animal Husbandry, Xinjiang Academy of Animal Science, Xinjiang, Republic of China.
Animal Science Research Institute · CNXinjiang Academy of Animal Science · CNXinjiang Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs), >200 nt in length, are transcribed from mammalian genomes. They play important regulatory roles in various biological processes; However, the function and expression profile of lncRNAs involved in the development of hair follicles in the fetus, have been relatively under-explored area. To investigate the specific role of lncRNAs and mRNAs that regulate hair follicle development, we herein performed a comprehensive study on the lncRNA and mRNA expression profiles of sheep at multiple embryonic days (E65, E85, E105, and E135) and six lambs aged one week (D7) and one month (D30) using RNA-seq technology. The number of genes (471 lncRNAs and 12,812 mRNAs) differentially expressed and potential targets of differentially expressed lncRNAs were predicted. Differentially expressed lncRNAs were grouped into 10 clusters based on their expression pattern by K-means clustering. Moreover, Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses showed that some differentially expressed mRNAs, such as DKK1, DSG4, FOXE1, Hoxc13, SFRP1, SFRP2, and Wnt10A overlapped with lncRNAs targets, and enriched in important hair follicle developmental pathways, including Wnt, TNF, and MAPK signaling pathways. In addition, 9 differentially expressed lncRNAs and 4 differentially expressed mRNAs were validated using quantitative real-time PCR (qRT-PCR). This study helps enrich the Ovis lncRNA databases and provides a comprehensive lncRNA transcriptome profile of fetal and postnatal skin of sheep. Additionally, it provides a foundation for further experiments on the role of lncRNAs in the regulation of hair growth in sheep.

Indexed as

Gene Expression Regulation, DevelopmentalGenomeAnimalsAnimals, NewbornCluster AnalysisGene Expression ProfilingGene OntologyGene Regulatory NetworksHair FollicleMolecular Sequence AnnotationReproducibility of ResultsRNA, Long NoncodingRNA, MessengerSheepRNA, Long NoncodingRNA, Messenger

Identifiers

PMID31186438
PMCPMC6559957
OpenAlexW2951335647

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.