Evidence map›Paper›PMID 31186357›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

The isoprenoid alcohol pathway, a synthetic route for isoprenoid biosynthesis.

James M Clomburg, Shuai Qian, Zaigao Tan, Seokjung Cheong, Ramon Gonzalez

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 174 citations in OpenAlex.

  1. Enhancement of levopimaradiene production inChinese herbal medicines · 2026
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  2. Synthesis of depressin, cryptomeridiol and 4-Beilstein journal of organic chemistry · 2026
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  9. Non-canonical plant metabolism.Nature plants · 2025
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  12. Review
  13. Substrate-Multiplexed Assessment of Aromatic Prenyltransferase Activity.Chembiochem : a European journal of chemical biology · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

James M ClomburgDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, TX 77005.
Shuai QianDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, TX 77005.
Zaigao TanDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, TX 77005.
Seokjung CheongDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, TX 77005.
Ramon GonzalezDepartment of Chemical and Biomolecular Engineering, Rice University, Houston, TX 77005; ramongonzale@usf.edu.
Rice University · USUniversity of South Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The more than 50,000 isoprenoids found in nature are all derived from the 5-carbon diphosphates isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP). Natively, IPP and DMAPP are generated by the mevalonate (MVA) and 2-C-methyl-d-erythritol-4-phosphate (MEP) pathways, which have been engineered to produce compounds with numerous applications. However, as these pathways are inherently constrained by carbon, energy inefficiencies, and their roles in native metabolism, engineering for isoprenoid biosynthesis at high flux, titer, and yield remains a challenge. To overcome these limitations, here we develop an alternative synthetic pathway termed the isoprenoid alcohol (IPA) pathway that centers around the synthesis and subsequent phosphorylation of IPAs. We first established a lower IPA pathway for the conversion of IPAs to isoprenoid pyrophosphate intermediates that enabled the production of greater than 2 g/L geraniol from prenol as well as limonene, farnesol, diaponeurosporene, and lycopene. We then designed upper IPA pathways for the generation of (iso)prenol from central carbon metabolites with the development of a route to prenol enabling its synthesis at more than 2 g/L. Using prenol as the linking intermediate further facilitated an integrated IPA pathway that resulted in the production of nearly 0.6 g/L total monoterpenoids from glycerol as the sole carbon source. The IPA pathway provides an alternative route to isoprenoids that is more energy efficient than native pathways and can serve as a platform for targeting a repertoire of isoprenoid compounds with application as high-value pharmaceuticals, commodity chemicals, and fuels.

Indexed as

Acyclic MonoterpenesBiocatalysisGlycerolHemiterpenesPentanolsSynthetic BiologyTerpenesAcyclic MonoterpenesgeraniolGlycerolHemiterpenesPentanolsprenolTerpenesde novo pathway designIPA pathwayisoprenoidsretrobiosynthesissynthetic biology

Identifiers

PMID31186357
PMCPMC6600936
OpenAlexW2951170587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.