Evidence map›Paper›PMID 31186351›Full record

ArticleThe Journal of biological chemistry2019

LIM-domain transcription complexes interact with ring-finger ubiquitin ligases and thereby impact islet β-cell function.

Alexa K Wade, Yanping Liu, Maigen M Bethea, Eliana Toren, Hubert M Tse, Chad S Hunter

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Epigenetic Regulation of Pancreas Development and Function.Advances in anatomy, embryology, and cell biology · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. The Ldb1 transcriptional co-regulator is required for establishment and maintenance of the pancreatic endocrine lineage.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  15. Review
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Alexa K WadeDepartment of Medicine, Division of Endocrinology Diabetes and Metabolism, University of Alabama at Birmingham, Birmingham, Alabama 35294.
Yanping LiuDepartment of Medicine, Division of Endocrinology Diabetes and Metabolism, University of Alabama at Birmingham, Birmingham, Alabama 35294.
Maigen M BetheaDepartment of Medicine, Division of Endocrinology Diabetes and Metabolism, University of Alabama at Birmingham, Birmingham, Alabama 35294.
Eliana TorenDepartment of Medicine, Division of Endocrinology Diabetes and Metabolism, University of Alabama at Birmingham, Birmingham, Alabama 35294.
Hubert M TseComprehensive Diabetes Center, University of Alabama at Birmingham, Birmingham, Alabama 35294.
Chad S HunterDepartment of Medicine, Division of Endocrinology Diabetes and Metabolism, University of Alabama at Birmingham, Birmingham, Alabama 35294 huntercs@uab.edu.ORCID 0000-0002-1644-447X
University of Alabama at Birmingham · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
University of Alabama at Birmingham's Diabetes Research CenterP30DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Kirk Michael Habegger · 2013 to 2026
$19.5M
Integrated Islet Distribution Program (U24) - 2021U24DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Carmella Evans-Molina, Joyce Carol Niland · 2021 to 2026
$17.8M
Training Program in Cell, Molecular, and Developmental BiologyT32GM008111 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YODER, BRADLEY K. · 1985 to 2022
$5.4M
Revealing LIM Domain Transcriptional Complexes that establish and maintain Beta Cell MassR01DK111483 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Chad S Hunter · 2017 to 2026
$3.4M
Redox Regulation of Anti-Viral Responses in Type 1 DiabetesR01DK099550 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TSE, HUBERT M · 2014 to 2018
$1.6M
The role of Lhx1 in pancreatic beta cell development and functionF31DK111181 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI JENKINS, MAIGEN MICHELLE BETHEA · 2017 to 2020
$146k
NCI NIH HHS P30 CA013148NIDDK NIH HHS F31 DK111181NIDDK NIH HHS P30 DK079626NIDDK NIH HHS R01 DK099550NIDDK NIH HHS R01 DK111483NIDDK NIH HHS U24 DK098085NIGMS NIH HHS T32 GM008111
6 · The paper itself

Abstract

Diabetes is characterized by a loss of β-cell mass, and a greater understanding of the transcriptional mechanisms governing β-cell function is required for future therapies. Previously, we reported that a complex of the Islet-1 (Isl1) transcription factor and the co-regulator single-stranded DNA-binding protein 3 (SSBP3) regulates the genes necessary for β-cell function, but few proteins are known to interact with this complex in β-cells. To identify additional components, here we performed SSBP3 reverse-cross-linked immunoprecipitation (ReCLIP)- and MS-based experiments with mouse β-cell extracts and compared the results with those from our previous Isl1 ReCLIP study. Our analysis identified the E3 ubiquitin ligases ring finger protein 20 (RNF20) and RNF40, factors that in nonpancreatic cells regulate transcription through imparting monoubiquitin marks on histone H2B (H2Bub1), a precursor to histone H3 lysine 4 trimethylation (H3K4me3). We hypothesized that RNF20 and RNF40 regulate similar genes as those regulated by Isl1 and SSBP3 and are important for β-cell function. We observed that

Indexed as

AnimalsDNA-Binding ProteinsEpigenesis, GeneticGlucose Transporter Type 2HistonesInsulinInsulin-Secreting CellsLIM Domain ProteinsLIM-Homeodomain ProteinsMaf Transcription Factors, LargeMiceProtein BindingProtein DomainsReactive Oxygen SpeciesRNA InterferenceRNA, Small InterferingDNA-Binding ProteinsGlucose Transporter Type 2histone H3 trimethyl Lys4HistonesInsulininsulin gene enhancer binding protein Isl-1LIM Domain ProteinsLIM-Homeodomain ProteinsMafa protein, mouseMaf Transcription Factors, LargeReactive Oxygen SpeciesRNA, Small InterferingRNF20 protein, mouseRnf40 protein, mouseSlc2a2 protein, mouseSsbp3 protein, mouseTranscription FactorsUbiquitin-Protein Ligaseschromatin immunoprecipitation (ChiP)diabetesH2Bub1H3K4me3histone modificationinsulin secretionisletpancreastranscription factortranscription regulation

Identifiers

PMID31186351
PMCPMC6682733
OpenAlexW2950337311

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.