Evidence map›Paper›PMID 31185901›Full record

ArticleBMC genomics2019

Multiple stressors produce differential transcriptomic patterns in a stream-dwelling salamander.

Timothy A Clay, Michael A Steffen, Michael L Treglia, Carolyn D Torres, Ana Lilia Trujano-Alvarez, Ronald M Bonett

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Introduction to the special issue Amphibian immunity: stress, disease and ecoimmunology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  5. Potential Effects of High Temperature and Heat Wave onCurrent issues in molecular biology · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Timothy A ClayDepartment of Biological Science, University of Tulsa, Tulsa, OK, 74104, USA. tim.clay@nicholls.edu.
Michael A SteffenDepartment of Biological Science, University of Tulsa, Tulsa, OK, 74104, USA.
Michael L TregliaDepartment of Biological Science, University of Tulsa, Tulsa, OK, 74104, USA.
Carolyn D TorresDepartment of Biological Science, University of Tulsa, Tulsa, OK, 74104, USA.
Ana Lilia Trujano-AlvarezDepartment of Biological Science, University of Tulsa, Tulsa, OK, 74104, USA.
Ronald M BonettDepartment of Biological Science, University of Tulsa, Tulsa, OK, 74104, USA. ron-bonett@utulsa.edu.ORCID http://orcid.org/0000-0002-2708-3446
University of Tulsa · USNicholls State University · USThe Nature Conservancy · USUniversity of New Hampshire · US

Funding

National Science Foundation IIA-1301789
6 · The paper itself

Abstract

backgroundGlobal biodiversity is decreasing at an alarming rate and amphibians are at the forefront of this crisis. Understanding the factors that negatively impact amphibian populations and effectively monitoring their health are fundamental to addressing this epidemic. Plasma glucocorticoids are often used to assess stress in amphibians and other vertebrates, but these hormones can be extremely dynamic and impractical to quantify in small organisms. Transcriptomic responses to stress hormones in amphibians have been largely limited to laboratory models, and there have been few studies on vertebrates that have evaluated the impact of multiple stressors on patterns of gene expression. Here we examined the gene expression patterns in tail tissues of stream-dwelling salamanders (Eurycea tynerensis) chronically exposed to the stress hormone corticosterone under different temperature regimes.

resultsWe found unique transcriptional signatures for chronic corticosterone exposure that were independent of temperature variation. Several of the corticosterone responsive genes are known to be involved in immune system response (LY-6E), oxidative stress (GSTM2 and TRX), and tissue repair (A2M and FX). We also found many genes to be influenced by temperature (CIRBP, HSC71, HSP40, HSP90, HSP70, ZNF593). Furthermore, the expression patterns of some genes (GSTM2, LY-6E, UMOD, ZNF593, CIRBP, HSP90) show interactive effects of temperature and corticosterone exposure, compared to each treatment alone. Through a series of experiments we also showed that stressor induced patterns of expression were largely consistent across ages, life cycle modes, and tissue regeneration.

conclusionsOutside of thermal stressors, the application of transcriptomes to monitor the health of non-human vertebrate systems has been vastly underinvestigated. Our study suggests that transcriptomic patterns harbor stressor specific signatures that can be highly informative for monitoring the diverse stressors of amphibian populations.

Indexed as

Gene Expression ProfilingAnimalsCaudataCorticosteroneLife Cycle StagesStress, PhysiologicalTemperatureTranscription, GeneticCorticosteroneBiomarkersSalamanderStressTranscriptome

Identifiers

PMID31185901
PMCPMC6560913
OpenAlexW2949548046

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.