Evidence map›Paper›PMID 31185898›Full record

ArticleBMC microbiology2019

Exploring the tissue tropism of pseudorabies virus based on miRNA level analysis.

Yi Fan, Ling Zhu, Xiangang Sun, Wenting Lyu, Lei Xu, Yue Yin, Jun Zhao, Jianbo Huang, Yichao Den, Zhiyi Jiang and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Yi FanPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Ling ZhuPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Xiangang SunPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Wenting LyuPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Lei XuPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Yue YinPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Jun ZhaoPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Jianbo HuangPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Yichao DenPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Zhiyi JiangPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Shiyao XuPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Xiyu MaoPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China.
Zhiwen XuPresent Address: College of Veterinary Medicine, Sichuan Agricultural University, Huimin Road 211, weenjiang district, Chengdu, Sichuan, China. abtcxzw@126.com.ORCID 0000-0002-9508-6593
Sichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPseudorabies virus (PRV, or suid herpesvirus, SuHV-1), a member of the herpesvirus family, has an extremely broad host range and threatens the pig industry in China. PRV can evade host innate immunity and infect the kidney, lung, brain and other tissues. At the same time, many studies have reported that microRNA (miRNA) can affect the replication of viruses by regulating gene expression levels.

resultsHere, to identify changes in miRNA expression and post-transcriptional regulation associated with PRV infection in the lung, spleen, and olfactory bulb, we sequenced small RNAs in tissues of rats infected or uninfected with PRV strain XJ (PRV-XJ). Sixty-one, 199 and 29 differentially-expressed miRNAs were identified in the lung, spleen, and olfactory bulb, respectively, of infected compared with uninfected rats. Among the miRNAs differentially-expressed in PRV-infected rats, 36, 171, and 15 miRNAs showed tissue-selective expression in the olfactory bulb, lung and spleen, respectively. All differentially-expressed miRNAs were analyzed for their GO functional annotations and KEGG pathway associations .

conclusionsIn PRV-XJ-infected rats, miRNAs were differentially expressed in the lung, spleen and olfactory bulb. These miRNAs were involved in regulating various pathways of the nervous, respiratory and immune systems, and may affect the tissue tropism of the virus and play pivotal roles in viral infection and proliferation.

Indexed as

AnimalsCase-Control StudiesChinaGene Expression RegulationGene Regulatory NetworksHerpesvirus 1, SuidHigh-Throughput Nucleotide SequencingLungMaleMicroRNAsOlfactory BulbOrgan SpecificityPseudorabiesRatsSequence Analysis, RNASpleenMicroRNAsLungmiRNAOlfactory bulbPseudorabies virusSpleenTissue tropism

Identifiers

PMID31185898
PMCPMC6558711
OpenAlexW2949398293

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.