Evidence map›Paper›PMID 31185858›Full record

ArticleProceedings. Biological sciences2019

Rare genetic variation and balanced polymorphisms are important for survival in global change conditions.

Reid S Brennan, April D Garrett, Kaitlin E Huber, Heidi Hargarten, Melissa H Pespeni

Abstract read
In one paragraph

Article in Proceedings. Biological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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  20. Natural COEvolutionary applications · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Reid S BrennanDepartment of Biology, University of Vermont , Burlington, VT , USA.
April D GarrettDepartment of Biology, University of Vermont , Burlington, VT , USA.
Kaitlin E HuberDepartment of Biology, University of Vermont , Burlington, VT , USA.
Heidi HargartenDepartment of Biology, University of Vermont , Burlington, VT , USA.
Melissa H PespeniDepartment of Biology, University of Vermont , Burlington, VT , USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Standing genetic variation is important for population persistence in extreme environmental conditions. While some species may have the capacity to adapt to predicted average future global change conditions, the ability to survive extreme events is largely unknown. We used single-generation selection experiments on hundreds of thousands of Strongylocentrotus purpuratus sea urchin larvae generated from wild-caught adults to identify adaptive genetic variation responsive to moderate (pH 8.0) and extreme (pH 7.5) low-pH conditions. Sequencing genomic DNA from pools of larvae, we identified consistent changes in allele frequencies across replicate cultures for each pH condition and observed increased linkage disequilibrium around selected loci, revealing selection on recombined standing genetic variation. We found that loci responding uniquely to either selection regime were at low starting allele frequencies while variants that responded to both pH conditions (11.6% of selected variants) started at high frequencies. Loci under selection performed functions related to energetics, pH tolerance, cell growth and actin/cytoskeleton dynamics. These results highlight that persistence in future conditions will require two classes of genetic variation: common, pH-responsive variants maintained by balancing selection in a heterogeneous environment, and rare variants, particularly for extreme conditions, that must be maintained by large population sizes.

Indexed as

Climate ChangeGenetic VariationAnimalsConservation of Natural ResourcesGene FrequencyHydrogen-Ion ConcentrationLarvaLinkage DisequilibriumPolymorphism, Single NucleotideSelection, GeneticStrongylocentrotus purpuratusadaptationexperimental selectionextreme eventsocean acidificationselect and resequencestanding genetic variation

Identifiers

PMID31185858
PMCPMC6571474

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.