Evidence map›Paper›PMID 31185017›Full record

ArticlePloS one2019

Features and structure of a cold active N-acetylneuraminate lyase.

Man Kumari Gurung, Bjørn Altermark, Ronny Helland, Arne O Smalås, Inger Lin U Ræder

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Man Kumari GurungThe Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UiT- The Arctic University of Norway, Tromsø, Norway.
Bjørn AltermarkThe Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UiT- The Arctic University of Norway, Tromsø, Norway.
Ronny HellandThe Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UiT- The Arctic University of Norway, Tromsø, Norway.
Arne O SmalåsThe Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UiT- The Arctic University of Norway, Tromsø, Norway.
Inger Lin U RæderThe Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UiT- The Arctic University of Norway, Tromsø, Norway.ORCID 0000-0002-3711-2538
UiT The Arctic University of Norway · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N-acetylneuraminate lyases (NALs) are enzymes that catalyze the reversible cleavage and synthesis of sialic acids. They are therefore commonly used for the production of these high-value sugars. This study presents the recombinant production, together with biochemical and structural data, of the NAL from the psychrophilic bacterium Aliivibrio salmonicida LFI1238 (AsNAL). Our characterization shows that AsNAL possesses high activity and stability at alkaline pH. We confirm that these properties allow for the use in a one-pot reaction at alkaline pH for the synthesis of N-acetylneuraminic acid (Neu5Ac, the most common sialic acid) from the inexpensive precursor N-acetylglucosamine. We also show that the enzyme has a cold active nature with an optimum temperature for Neu5Ac synthesis at 20°C. The equilibrium constant for the reaction was calculated at different temperatures, and the formation of Neu5Ac acid is favored at low temperatures, making the cold active enzyme a well-suited candidate for use in such exothermic reactions. The specific activity is high compared to the homologue from Escherichia coli at three tested temperatures, and the enzyme shows a higher catalytic efficiency and turnover number for cleavage at 37°C. Mutational studies reveal that amino acid residue Asn 168 is important for the high kcat. The crystal structure of AsNAL was solved to 1.65 Å resolution and reveals a compact, tetrameric protein similar to other NAL structures. The data presented provides a framework to guide further optimization of its application in sialic acid production and opens the possibility for further design of the enzyme.

Indexed as

Cold TemperatureAliivibrio salmonicidaAmino Acid SubstitutionBacterial ProteinsCatalysisEnzyme StabilityEscherichia coliMutation, MissenseN-Acetylneuraminic AcidOxo-Acid-LyasesProtein Structure, QuaternarySpecies SpecificityBacterial ProteinsN-acetylneuraminate lyaseN-Acetylneuraminic AcidOxo-Acid-Lyases

Identifiers

PMID31185017
PMCPMC6559660
OpenAlexW2949642609

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.