Evidence map›Paper›PMID 31184588›Full record

ArticleeLife2019

Structure of Vps4 with circular peptides and implications for translocation of two polypeptide chains by AAA+ ATPases.

Han Han, James M Fulcher, Venkata P Dandey, Janet H Iwasa, Wesley I Sundquist, Michael S Kay, Peter S Shen, Christopher P Hill

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Visualization of the Cdc48 AAA+ ATPase protein unfolding pathway.bioRxiv : the preprint server for biology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Friction-driven membrane scission by the human ESCRT-III proteins CHMP1B and IST1.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Review
  11. Review
  12. Article
  13. AAA+ proteins: one motor, multiple ways to work.Biochemical Society transactions · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. AAA+ ATPases: structural insertions under the magnifying glass.Current opinion in structural biology · 2021
    Review
  18. Article
  19. Article
  20. Rearranging AAA+ architecture to accommodate folded substrates.Nature structural & molecular biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Han HanDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0003-0361-4254
James M FulcherDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0001-9033-3623
Venkata P DandeySimons Electron Microscopy Center, New York Structural Biology Center, New York, United States.
Janet H IwasaDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0002-4949-7607
Wesley I SundquistDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0001-9988-6021
Michael S KayDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0003-3186-9684
Peter S ShenDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0002-6256-6910
Christopher P HillDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0001-6796-7740
University of Utah · USNew York Structural Biology Center · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Virus TransmissionP50AI150464 · NIAID · UNIVERSITY OF UTAH · PI HOPE, THOMAS · 2019 to 2021
$14.9M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
ESCRT-III and MIT Protein Complexes in CytokinesisR01GM112080 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI CHRISTOPHER P. HILL, WESLEY I. SUNDQUIST · 2014 to 2026
$4.1M
NIAID NIH HHS P50 AI150464NIGMS NIH HHS P41 GM103310NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM112080NIH HHS P41 GM103310NIH HHS P50 GM082545NIH HHS R01 GM112080Simons Foundation SF349247
6 · The paper itself

Abstract

Many AAA+ ATPases form hexamers that unfold protein substrates by translocating them through their central pore. Multiple structures have shown how a helical assembly of subunits binds a single strand of substrate, and indicate that translocation results from the ATP-driven movement of subunits from one end of the helical assembly to the other end. To understand how more complex substrates are bound and translocated, we demonstrated that linear and cyclic versions of peptides bind to the

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceATPases Associated with Diverse Cellular ActivitiesBinding, CompetitiveCryoelectron MicroscopyEndosomal Sorting Complexes Required for TransportEndosomesModels, MolecularPeptidesPeptides, CyclicProtein BindingProtein ConformationProtein MultimerizationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesEndosomal Sorting Complexes Required for TransportPeptidesPeptides, CyclicSaccharomyces cerevisiae ProteinsVPS4 protein, S cerevisiaeAAA+ ATPasebiochemistrychemical biologycryo-EMmolecular biophysicsprotein structureS. cerevisiaestructural biology

Identifiers

PMID31184588
PMCPMC6602582
OpenAlexW2952833887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.