Evidence map›Paper›PMID 31183950›Full record

ArticleJournal of applied microbiology2019

A sensitive method for the recovery of Escherichia coli serogroup O55 including Shiga toxin-producing variants for potential use in outbreaks.

M Kirchner, E Sayers, S Cawthraw, N Duggett, R Gosling, C Jenkins, T J Dallman, D Mueller-Doblies, M F Anjum

Abstract read
In one paragraph

Article in Journal of applied microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

M KirchnerDepartment of Bacteriology, Animal and Plant Health Agency, Addlestone, Surrey, UK.
E SayersDepartment of Bacteriology, Animal and Plant Health Agency, Addlestone, Surrey, UK.
S CawthrawDepartment of Bacteriology, Animal and Plant Health Agency, Addlestone, Surrey, UK.
N DuggettDepartment of Bacteriology, Animal and Plant Health Agency, Addlestone, Surrey, UK.
R GoslingDepartment of Bacteriology, Animal and Plant Health Agency, Addlestone, Surrey, UK.
C JenkinsPublic Health England, London, UK.
T J DallmanPublic Health England, London, UK.
D Mueller-DobliesDepartment of Bacteriology, Animal and Plant Health Agency, Addlestone, Surrey, UK.
M F AnjumDepartment of Bacteriology, Animal and Plant Health Agency, Addlestone, Surrey, UK.ORCID https://orcid.org/0000-0001-5278-7587

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimShiga toxin-producing Escherichia coli (STEC) cause bloody diarrhoea, kidney failure and occasionally death. However, identifying the source of infection caused by STEC other than serogroup O157 is hampered by the availability of sensitive methods for detecting these pathogens. In this study, we developed novel tools for detecting E. coli O55 that is potentially associated with human outbreaks. METHODS AND

resultsOverall specificity of immuno-magnetic separation (IMS) beads coated with anti-O55 serum was good with exception of cross-reactivity with E. coli O22 and O23, which was eliminated using an O55-specific PCR. Limit of detection for E. coli O55 using O55-IMS beads in spiked cattle faeces was on average 50 CFU per ml (range 1-90), and improved to <10 CFU per ml using the O55-specific PCR, following IMS on samples enriched for 2 h with E. coli O55. Application of these tools to test cattle faeces collected on-farm allowed the isolation of O55:H19, which through whole genome sequencing was compared to STEC O55:H7 human outbreak strains.

conclusionThese tools provide a sensitive method which could be used to screen samples for STEC O55, whether environmental or human clinical. SIGNIFICANCE AND IMPACT OF THE STUDY: Several human outbreaks reported in England were caused by STEC O55:H7. Tools developed here could assist in identification of the environmental source for these isolates, which has not yet been established.

Indexed as

AnimalsCattleDisease OutbreaksEnglandEscherichia coli InfectionsEscherichia coli ProteinsFarmsFecesHumansLimit of DetectionPolymerase Chain ReactionSensitivity and SpecificitySerogroupShiga-Toxigenic Escherichia coliShiga ToxinVirulence FactorsEscherichia coli ProteinsShiga ToxinVirulence Factorsenterohaemorrhagic Escherichia colienvironmentalimmuno-magentic separationpathogenrapid diagnostics

Identifiers

PMID31183950
PMCPMC6852171

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.