Evidence map›Paper›PMID 31183871›Full record

ArticleMedical physics2019

Parallel beamlet dose calculation via beamlet contexts in a distributed multi-GPU framework.

Ryan Neph, Cheng Ouyang, John Neylon, Youming Yang, Ke Sheng

Abstract read
In one paragraph

Article in Medical physics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Many-isocenter optimization for robotic radiotherapy.Physics in medicine and biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ryan NephDepartment of Radiation Oncology, University of California Los Angeles, 200 Medical Plaza, #B265, Los Angeles, California, 90095, USA.
Cheng OuyangDepartment of Radiation Oncology, University of California Los Angeles, 200 Medical Plaza, #B265, Los Angeles, California, 90095, USA.
John NeylonDepartment of Radiation Oncology, University of California Los Angeles, 200 Medical Plaza, #B265, Los Angeles, California, 90095, USA.
Youming YangDepartment of Radiation Oncology, University of California Los Angeles, 200 Medical Plaza, #B265, Los Angeles, California, 90095, USA.
Ke ShengDepartment of Radiation Oncology, University of California Los Angeles, 200 Medical Plaza, #B265, Los Angeles, California, 90095, USA.

Funding

Development of a versatile robotic radiation therapy systemR44CA183390 · NCI · RADIABEAM TECHNOLOGIES, LLC · PI SHENG, KE, YONEMOTO, JAY · 2017 to 2024
$5.8M
Robust IMPT with automated beam orientation and scanning spot optimizationR01CA230278 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHENG, KE · 2019 to 2023
$1.9M
Motion Management of Pancreatic Cancer in MRI-Guided RadiotherapyR01CA188300 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SHENG, KE · 2015 to 2019
$1.7M
(NCI) Developing an Intermediate Energy Linac for Robotic RadiotherapyR43CA183390 · NCI · RADIABEAM TECHNOLOGIES, LLC · PI BOUCHER, SALIME · 2015 to 2016
$265k
DOE DE-SC0017057DOE DE-SC0017687NCI NIH HHS R01 CA188300NCI NIH HHS R01 CA230278NCI NIH HHS R43 CA183390NCI NIH HHS R44 CA183390NIH HHS R01CA188300NIH HHS R43CA183390NIH HHS R44CA183390
6 · The paper itself

Abstract

purposeDose calculation is one of the most computationally intensive, yet essential tasks in the treatment planning process. With the recent interest in automatic beam orientation and arc trajectory optimization techniques, there is a great need for more efficient model-based dose calculation algorithms that can accommodate hundreds to thousands of beam candidates at once. Foundational work has shown the translation of dose calculation algorithms to graphical processing units (GPUs), lending to remarkable gains in processing efficiency. But these methods provide parallelization of dose for only a single beamlet, serializing the calculation of multiple beamlets and under-utilizing the potential of modern GPUs. In this paper, the authors propose a framework enabling parallel computation of many beamlet doses using a novel beamlet context transformation and further embed this approach in a scalable network of multi-GPU computational nodes.

methodsThe proposed context-based transformation separates beamlet-local density and TERMA into distinct beamlet contexts that independently provide sufficient data for beamlet dose calculation. Beamlet contexts are arranged in a composite context array with dosimetric isolation, and the context array is subjected to a GPU collapsed-cone convolution superposition procedure, producing the set of beamlet-specific dose distributions in a single pass. Dose from each context is converted to a sparse representation for efficient storage and retrieval during treatment plan optimization. The context radius is a new parameter permitting flexibility between the speed and fidelity of the dose calculation process. A distributed manager-worker architecture is constructed around the context-based GPU dose calculation approach supporting an arbitrary number of worker nodes and resident GPUs. Phantom experiments were executed to verify the accuracy of the context-based approach compared to Monte Carlo and a reference CPU-CCCS implementation for single beamlets and broad beams composed by addition of beamlets. Dose for representative 4π beam sets was calculated in lung and prostate cases to compare its efficiency with that of an existing beamlet-sequential GPU-CCCS implementation. Code profiling was also performed to evaluate the scalability of the framework across many networked GPUs.

resultsThe dosimetric accuracy of the context-based method displays <1.35% and 2.35% average error from the existing serialized CPU-CCCS algorithm and Monte Carlo simulation for beamlet-specific PDDs in water and slab phantoms, respectively. The context-based method demonstrates substantial speedup of up to two orders of magnitude over the beamlet-sequential GPU-CCCS method in the tested configurations. The context-based framework demonstrates near linear scaling in the number of distributed compute nodes and GPUs employed, indicating that it is flexible enough to meet the performance requirements of most users by simply increasing the hardware utilization.

conclusionsThe context-based approach demonstrates a new expectation of performance for beamlet-based dose calculation methods. This approach has been successful in accelerating the dose calculation process for very large-scale treatment planning problems - such as automatic 4π IMRT beam orientation and VMAT arc trajectory selection, with hundreds of thousands of beamlets - in clinically feasible timeframes. The flexibility of this framework makes it as a strong candidate for use in a variety of other very large-scale treatment planning tasks and clinical workflows.

Indexed as

Computer GraphicsRadiation DosageMonte Carlo MethodPhantoms, ImagingRadiometryRadiotherapy DosageRadiotherapy, Intensity-ModulatedRadiotherapy Planning, Computer-Assistedbeamletconvolutiondistributed computingdose calculationGPU

Identifiers

PMID31183871
PMCPMC6692225

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.