Evidence map›Paper›PMID 31183604›Full record

ArticlePlant molecular biology2019

Wheat wounding-responsive HD-Zip IV transcription factor GL7 is predominantly expressed in grain and activates genes encoding defensins.

Nataliya Kovalchuk, Wei Wu, Natalia Bazanova, Nicolas Reid, Rohan Singh, Neil Shirley, Omid Eini, Alexander A T Johnson, Peter Langridge, Maria Hrmova and 1 more

Erratum issuedAbstract read
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In one paragraph

Article in Plant molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Plant Transcription Factors Involved in Drought and Associated Stresses.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Nataliya KovalchukSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
Wei WuSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
Natalia BazanovaSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
Nicolas ReidSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
Rohan SinghSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
Neil ShirleySchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
Omid EiniDepartment of Plant Protection, School of Agriculture, University of Zanjan, Zanjan, Iran.
Alexander A T JohnsonSchool of BioSciences, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Peter LangridgeSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
Maria HrmovaSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia. maria.hrmova@adelaide.edu.au.ORCID http://orcid.org/0000-0002-3545-0605
Sergiy LopatoSchool of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA, 5064, Australia.
The University of Adelaide · AUHealth Sciences and Nutrition · AUHuaiyin Normal University · CNSichuan Agricultural University · CNThe University of Melbourne · AUUniversity of Zanjan · IR

Funding

Australian Research Council (AU) LP120100201
6 · The paper itself

Abstract

key messageSeveral classes of transcription factors are involved in the activation of defensins. A new type of the transcription factor responsible for the regulation of wheat grain specific defensins was characterised in this work. HD-Zip class IV transcription factors constitute a family of multidomain proteins. A full-length cDNA of HD-Zip IV, designated TaGL7 was isolated from the developing grain of bread wheat, using a specific DNA sequence as bait in the Y1H screen. 3D models of TaGL7 HD complexed with DNA cis-elements rationalised differences that underlined accommodations of binding and non-binding DNA, while the START-like domain model predicted binding of lipidic molecules inside a concave hydrophobic cavity. The 3'-untranslated region of TaGL7 was used as a probe to isolate the genomic clone of TdGL7 from a BAC library prepared from durum wheat. The spatial and temporal activity of the TdGL7 promoter was tested in transgenic wheat, barley and rice. TdGL7 was expressed mostly in ovary at fertilisation and its promoter was active in a liquid endosperm during cellularisation and later in the endosperm transfer cells, aleurone, and starchy endosperm. The pattern of TdGL7 expression resembled that of genes that encode grain-specific lipid transfer proteins, particularly defensins. In addition, GL7 expression was upregulated by mechanical wounding, similarly to defensin genes. Co-bombardment of cultured wheat cells with TdGL7 driven by constitutive promoter and seven grain or root specific defensin promoters fused to GUS gene, revealed activation of four promoters. The data confirmed the previously proposed role of HD-Zip IV transcription factors in the regulation of genes that encode lipid transfer proteins involved in lipid transport and defence. The TdGL7 promoter could be used to engineer cereal grains with enhanced resistance to insects and fungal infections.

Indexed as

Gene Expression Regulation, PlantDefensinsDNA, ComplementaryEdible GrainGenes, ReporterHordeumOrgan SpecificityOryzaPlant ProteinsPlants, Genetically ModifiedPromoter Regions, GeneticTranscription FactorsTriticumTwo-Hybrid System TechniquesaleuroneDefensinsDNA, ComplementaryPlant ProteinsTranscription FactorsBarleyBiotechnologyMolecular modelRiceStructural bioinformaticsWheatWoundingYeast-1-hybrid

Identifiers

PMID31183604
OpenAlexW2950156358

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.