Evidence map›Paper›PMID 31182776›Full record

ArticleScientific reports2019

Orb-weaving spider Araneus ventricosus genome elucidates the spidroin gene catalogue.

Nobuaki Kono, Hiroyuki Nakamura, Rintaro Ohtoshi, Daniel A Pedrazzoli Moran, Asaka Shinohara, Yuki Yoshida, Masayuki Fujiwara, Masaru Mori, Masaru Tomita, Kazuharu Arakawa

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 106 citations in OpenAlex.

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  16. The protamines of the noble false widow spiderbioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Nobuaki KonoInstitute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.ORCID http://orcid.org/0000-0001-5960-7956
Hiroyuki NakamuraSpiber Inc., 234-1 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Rintaro OhtoshiSpiber Inc., 234-1 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Daniel A Pedrazzoli MoranSpiber Inc., 234-1 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Asaka ShinoharaSpiber Inc., 234-1 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Yuki YoshidaGraduate School of Media and Governance, Keio University, 5322 Endo, Fujisawa, Kanagawa, 252-0882, Japan.ORCID http://orcid.org/0000-0003-2749-8171
Masayuki FujiwaraInstitute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Masaru MoriInstitute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Masaru TomitaInstitute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan.
Kazuharu ArakawaInstitute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan. gaou@sfc.keio.ac.jp.ORCID http://orcid.org/0000-0002-2893-4919
Keio University · JPSpiber (Japan) · JPKeio University Shonan Fujisawa · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the family Araneidae are common orb-weaving spiders, and they produce several types of silks throughout their behaviors and lives, from reproduction to foraging. Egg sac, prey capture thread, or dragline silk possesses characteristic mechanical properties, and its variability makes it a highly attractive material for ecological, evolutional, and industrial fields. However, the complete set of constituents of silks produced by a single species is still unclear, and novel spidroin genes as well as other proteins are still being found. Here, we present the first genome in genus Araneus together with the full set of spidroin genes with unamplified long reads and confirmed with transcriptome of the silk glands and proteome analysis of the dragline silk. The catalogue includes the first full length sequence of a paralog of major ampullate spidroin MaSp3, and several spider silk-constituting elements designated SpiCE. Family-wide phylogenomic analysis of Araneidae suggests the relatively recent acquisition of these genes, and multiple-omics analyses demonstrate that these proteins are critical components in the abdominal spidroin gland and dragline silk, contributing to the outstanding mechanical properties of silk in this group of species.

Indexed as

PhylogenyAmino Acid SequenceAnimalsArachnidaFibroinsGenomeMolecular Sequence AnnotationSilkSpidersTranscriptomeFibroinsSilk

Identifiers

PMID31182776
PMCPMC6557832
OpenAlexW2948974726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.