Evidence map›Paper›PMID 31182756›Full record

ArticleScientific reports2019

Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development.

Elo Madissoon, Anastasios Damdimopoulos, Shintaro Katayama, Kaarel Krjutškov, Elisabet Einarsdottir, Katariina Mamia, Bert De Groef, Outi Hovatta, Juha Kere, Pauliina Damdimopoulou

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. GoatAnimals : an open access journal from MDPI · 2023
    Article
  6. Comprehensive analysis of 124 transcriptomes from 31 tissues in developing, juvenile, and adult Japanese Black cattle.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Maternal factors regulating preimplantation development in mice.Current topics in developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 6 countries.

Elo MadissoonDepartment of Biosciences and Nutrition, Karolinska Institutet, SE-14186, Stockholm, Sweden. elo.madissoon@ebi.ac.uk.ORCID http://orcid.org/0000-0003-2405-4911
Anastasios DamdimopoulosBioinformatics and Expression Analysis core facility, Department of Biosciences and Nutrition, Karolinska Institutet, SE-14186, Stockholm, Sweden.
Shintaro KatayamaDepartment of Biosciences and Nutrition, Karolinska Institutet, SE-14186, Stockholm, Sweden.
Kaarel KrjutškovCompetence Centre on Health Technologies, 50410, Tartu, Estonia.
Elisabet EinarsdottirDepartment of Biosciences and Nutrition, Karolinska Institutet, SE-14186, Stockholm, Sweden.
Katariina MamiaDepartment of Clinical Science, Intervention and Technology, Karolinska Institutet, SE-14186, Stockholm, Sweden.
Bert De GroefDepartment of Physiology, Anatomy and Microbiology, La Trobe University, Bundoora, Victoria, 3086, Australia.ORCID http://orcid.org/0000-0003-3191-852X
Outi HovattaDepartment of Clinical Science, Intervention and Technology, Karolinska Institutet, SE-14186, Stockholm, Sweden.
Juha KereDepartment of Biosciences and Nutrition, Karolinska Institutet, SE-14186, Stockholm, Sweden. juha.kere@ki.se.ORCID http://orcid.org/0000-0003-1974-0271
Pauliina DamdimopoulouDepartment of Biosciences and Nutrition, Karolinska Institutet, SE-14186, Stockholm, Sweden. pauliina.damdimopoulou@ki.se.
Karolinska Institutet · SEGuy's Hospital · GBInstitute of Genetics · HULa Trobe University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pleomorphic adenoma gene 1 (PLAG1) is a transcription factor involved in cancer and growth. We discovered a de novo DNA motif containing a PLAG1 binding site in the promoters of genes activated during zygotic genome activation (ZGA) in human embryos. This motif was located within an Alu element in a region that was conserved in the murine B1 element. We show that maternally provided Plag1 is needed for timely mouse preimplantation embryo development. Heterozygous mouse embryos lacking maternal Plag1 showed disrupted regulation of 1,089 genes, spent significantly longer time in the 2-cell stage, and started expressing Plag1 ectopically from the paternal allele. The de novo PLAG1 motif was enriched in the promoters of the genes whose activation was delayed in the absence of Plag1. Further, these mouse genes showed a significant overlap with genes upregulated during human ZGA that also contain the motif. By gene ontology, the mouse and human ZGA genes with de novo PLAG1 motifs were involved in ribosome biogenesis and protein synthesis. Collectively, our data suggest that PLAG1 affects embryo development in mice and humans through a conserved DNA motif within Alu/B1 elements located in the promoters of a subset of ZGA genes.

Indexed as

Gene Expression Regulation, DevelopmentalGenomeAnimalsBase SequenceBinding SitesDNA-Binding ProteinsEmbryo, MammalianEmbryonic DevelopmentFemaleHumansMice, KnockoutNucleotide MotifsOvaryPromoter Regions, GeneticReproductionUterusDNA-Binding ProteinsPLAG1 protein, humanPlag1 protein, mouse

Identifiers

PMID31182756
PMCPMC6557853
OpenAlexW2951322564

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.