Evidence map›Paper›PMID 31182601›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Shear stress regulation of miR-93 and miR-484 maturation through nucleolin.

Brendan Gongol, Traci Marin, Jiao Zhang, Shen-Chih Wang, Wei Sun, Ming He, Shanshan Chen, Lili Chen, Jie Li, Jun-Hui Liu and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. MicroRNAs in Mechanical Homeostasis.Cold Spring Harbor perspectives in medicine · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Role of liver sinusoidal endothelial cells in liver diseases.Nature reviews. Gastroenterology & hepatology · 2021
    Review
  18. METTL3-dependent NProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Review
  20. Mediators of inflammation · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 3 countries.

Brendan GongolDepartment of Medicine, University of California, San Diego, CA 92093.
Traci MarinDepartment of Health Sciences, Victor Valley College, Victorville, CA 92395.
Jiao ZhangDepartment of Medicine, University of California, San Diego, CA 92093.
Shen-Chih WangDepartment of Anesthesiology, Taipei Veterans General Hospital, 115 Taipei, Taiwan.
Wei SunDivision of Biomedical Sciences, University of California, Riverside, CA 92521.
Ming HeDepartment of Medicine, University of California, San Diego, CA 92093.
Shanshan ChenCardiovascular Research Center, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, Key Laboratory of Environment and Genes Related to Diseases, Xi'an Jiaotong University, Ministry of Education of China Xi'an, 710029 Xi'an, China.
Lili ChenCardiovascular Research Center, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, Key Laboratory of Environment and Genes Related to Diseases, Xi'an Jiaotong University, Ministry of Education of China Xi'an, 710029 Xi'an, China.
Jie LiCardiovascular Research Center, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, Key Laboratory of Environment and Genes Related to Diseases, Xi'an Jiaotong University, Ministry of Education of China Xi'an, 710029 Xi'an, China.
Jun-Hui LiuDepartment of Clinical Laboratory, First Affiliated Hospital of the Medical School, Xi'an Jiaotong University, 710029 Xi'an, China.
Marcy MartinDepartment of Medicine, University of California, San Diego, CA 92093.
Yue HanInstitute of Mechanobiology and Medical Engineering, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, 200240 Shanghai, China.
Jian KangDepartment of Medicine, University of California, San Diego, CA 92093.
David A JohnsonDivision of Biomedical Sciences, University of California, Riverside, CA 92521.
Christian LytleDivision of Biomedical Sciences, University of California, Riverside, CA 92521.
Yi-Shuan LiDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093.
Po-Hsun HuangCardiovascular Research Center, National Yang-Ming University, 112 Taipei, Taiwan.
Shu ChienDepartment of Medicine, University of California, San Diego, CA 92093; shuchien@eng.ucsd.edu jshyy@ucsd.edu.
John Y-J ShyyDepartment of Medicine, University of California, San Diego, CA 92093; shuchien@eng.ucsd.edu jshyy@ucsd.edu.
University of California San Diego · USUniversity of California, Riverside · USXi'an Jiaotong University · CNFirst Affiliated Hospital of Xi'an Jiaotong University · CNNational Yang Ming Chiao Tung University · TWShanghai Jiao Tong University · CNTaipei Veterans General Hospital · TWVictor Valley College · US

Funding

Systems Biology Analyses for Hemodynamic Regulation of Vascular HomeostasisR01HL108735 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2012 to 2024
$13.4M
Shear Regulation of MicroRNA Transportomes and Targetomes in Vascular HomeostasisR01HL106579 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2011 to 2022
$8.3M
Innate Immune Activation and Endothelial Cell Dysfunction in Acute Kawasaki DiseaseR01HL140898 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BURNS, JANE C, HOFFMAN, HAROLD M · 2018 to 2022
$4.3M
Training in the Next Generation in Respiratory ScienceT32HL134632 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MALHOTRA, ATUL, POWELL, FRANK L. · 2017 to 2021
$2.1M
NHLBI NIH HHS R01 HL106579NHLBI NIH HHS R01 HL108735NHLBI NIH HHS R01 HL140898NHLBI NIH HHS T32 HL134632
6 · The paper itself

Abstract

Pulsatile shear (PS) and oscillatory shear (OS) elicit distinct mechanotransduction signals that maintain endothelial homeostasis or induce endothelial dysfunction, respectively. A subset of microRNAs (miRs) in vascular endothelial cells (ECs) are differentially regulated by PS and OS, but the regulation of the miR processing and its implications in EC biology by shear stress are poorly understood. From a systematic in silico analysis for RNA binding proteins that regulate miR processing, we found that nucleolin (NCL) is a major regulator of miR processing in response to OS and essential for the maturation of miR-93 and miR-484 that target mRNAs encoding Krüppel-like factor 2 (KLF2) and endothelial nitric oxide synthase (eNOS). Additionally, anti-miR-93 and anti-miR-484 restore KLF2 and eNOS expression and NO bioavailability in ECs under OS. Analysis of posttranslational modifications of NCL identified that serine 328 (S328) phosphorylation by AMP-activated protein kinase (AMPK) was a major PS-activated event. AMPK phosphorylation of NCL sequesters it in the nucleus, thereby inhibiting miR-93 and miR-484 processing and their subsequent targeting of KLF2 and eNOS mRNA. Elevated levels of miR-93 and miR-484 were found in sera collected from individuals afflicted with coronary artery disease in two cohorts. These findings provide translational relevance of the AMPK-NCL-miR-93/miR-484 axis in miRNA processing in EC health and coronary artery disease.

Indexed as

AdultAgedAMP-Activated Protein KinasesAnimalsCase-Control StudiesCells, CulturedComputational BiologyCoronary Artery DiseaseEndothelial CellsEndothelium, VascularFemaleGene Knockdown TechniquesHumansKruppel-Like Transcription FactorsMaleMechanotransduction, CellularAMP-Activated Protein KinasesKLF2 protein, humanKruppel-Like Transcription FactorsMicroRNAsMIRN484 microRNA, humanMIRN93 microRNA, humanNitric Oxide Synthase Type IIINOS3 protein, humanNucleolinPhosphoproteinsRNA-Binding ProteinsSerineAMPKendothelial cellsmiRNAnucleolinshear stress

Identifiers

PMID31182601
PMCPMC6600934
OpenAlexW2951696645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.