Evidence map›Paper›PMID 31181875›Full record

ArticleClinical and experimental reproductive medicine2019

Differential gene expression analysis of human cumulus cells.

Sirin Bakti Demiray, Ege Nazan Tavmergen Goker, Erol Tavmergen, Ozlem Yilmaz, Nilufer Calimlioglu, Huseyin Okan Soykam, Gulperi Oktem, Ugur Sezerman

Registry-linked trialAbstract read
In one paragraph

Article in Clinical and experimental reproductive medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06315777 (Elucidating the GREM1, HAS2 and PTGS2 Gene Expression as Oocytes Development Competency Markers Among Women With Poor Ovarian Reserve), which is not on this map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06315777 naunknown statusnot on this mapstarted 2021, after this paper: background citation

Elucidating the GREM1, HAS2 and PTGS2 Gene Expression as Oocytes Development Competency Markers Among Women With Poor Ovarian Reserve (POR) Following the in Vitro Maturation (IVM)

TypeinterventionalSponsorNational University of MalaysiaRan2021 to 2024Enrolled30ConditionsIncreased Oocyte Death, in Vitro Maturation, GREM1 Gene Mutation, Cumulus CellArmscumulus cell oocytes complex (COC) among women with poor ovarian reserve
3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Observational
  10. Review
  11. Differential Gene Expressions ofAdvanced biomedical research · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Fluid biopsies forMedicine international
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sirin Bakti DemirayAssisted Reproduction Unit, Tepecik Education and Research Hospital, Izmir, Turkey.
Ege Nazan Tavmergen GokerDepartment of Obstetrics and Gynecology, Ege University Faculty of Medicine, Izmir, Turkey.
Erol TavmergenDepartment of Obstetrics and Gynecology, Ege University Faculty of Medicine, Izmir, Turkey.
Ozlem YilmazDepartment of Histology and Embryology, Ege University Faculty of Medicine, Izmir, Turkey.
Nilufer CalimliogluDepartment of Obstetrics and Gynecology, Ege University Faculty of Medicine, Izmir, Turkey.
Huseyin Okan SoykamEpigenetiks Genetics Bioinformatics Software Inc., Istanbul, Turkey.
Gulperi OktemDepartment of Histology and Embryology, Ege University Faculty of Medicine, Izmir, Turkey.
Ugur SezermanDepartment of Biostatistics and Bioinformatics, Acibadem Mehmet Ali Aydinlar University, Institute of Health Sciences, Istanbul, Turkey.

Funding

University Scientific Research Project Fund Ege-BAP TIP-00014
6 · The paper itself

Abstract

objectiveThis study was performed to explore the possibility that each oocyte and its surrounding cumulus cells might have different genetic expression patterns that could affect human reproduction.

methodsDifferential gene expression analysis was performed for 10 clusters of cumulus cells obtained from 10 cumulus-oocyte complexes from 10 patients. Same procedures related to oocyte maturation, microinjection, and microarray analyses were performed for each group of cumulus cells. Two differential gene expression analyses were performed: one for the outcome of clinical pregnancy and one for the outcome of live birth.

resultsSignificant genes resulting from these analyses were selected and the top 20 affected pathways in each group were analyzed. Circadian entrainment is determined to be the most affected pathway for clinical pregnancy, and proteoglycans in cancer pathway is the most affected pathway for live birth. Circadian entrainment is also amongst the 12 pathways that are found to be in top 20 affected pathways for both outcomes, and has both lowest p-value and highest number of times found count.

conclusionAlthough further confirmatory studies are necessary, findings of this study suggest that these pathways, especially circadian entrainment in cumulus cells, may be essential for embryo development and pregnancy.

Indexed as

Assisted reproductive techniquesCircadian clocksCumulus cellsGranulosa cellsInfertilityLive birthMicroarray analysis

Identifiers

PMID31181875
PMCPMC6572664

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.