Evidence map›Paper›PMID 31181061›Full record

ArticlePLoS biology2019

Deciphering molecular mechanism of silver by integrated omic approaches enables enhancing its antimicrobial efficacy in E. coli.

Haibo Wang, Aixin Yan, Zhigang Liu, Xinming Yang, Zeling Xu, Yuchuan Wang, Runming Wang, Mohamad Koohi-Moghadam, Ligang Hu, Wei Xia and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 104 citations in OpenAlex.

  1. The arsenic proteome in cancer: Unravelling molecular mechanisms of anticancer drugs.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2026
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  12. The good, the bad, and the ugly of metals as antimicrobials.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
    Review
  13. Review
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  15. Molecular mechanisms of tigecycline-resistance amongFrontiers in cellular and infection microbiology · 2024
    Review
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Haibo WangDepartment of Chemistry, The University of Hong Kong, Hong Kong, P. R. China.
Aixin YanSchool of Biological Sciences, The University of Hong Kong, Hong Kong, P. R. China.ORCID 0000-0003-0310-5492
Zhigang LiuCAS Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, National Centre for Magnetic Resonance in Wuhan, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, P. R. China.ORCID 0000-0002-1363-6708
Xinming YangDepartment of Chemistry, The University of Hong Kong, Hong Kong, P. R. China.ORCID 0000-0001-6240-5212
Zeling XuSchool of Biological Sciences, The University of Hong Kong, Hong Kong, P. R. China.
Yuchuan WangSchool of Chemistry, Sun Yat-sen University, Guangzhou, P. R. China.
Runming WangDepartment of Chemistry, The University of Hong Kong, Hong Kong, P. R. China.
Mohamad Koohi-MoghadamDepartment of Chemistry, The University of Hong Kong, Hong Kong, P. R. China.ORCID 0000-0002-7286-0427
Ligang HuState Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, P. R. China.
Wei XiaSchool of Chemistry, Sun Yat-sen University, Guangzhou, P. R. China.ORCID 0000-0001-6480-3265
Huiru TangState Key Laboratory of Genetic Engineering, Zhongshan Hospital and School of Life Sciences, Fudan University, Shanghai International Centre for Molecular Phenomics, Collaborative Innovation Centre for Genetics and Development, Shanghai, P. R. China.
Yulan WangSingapore Phenome Center, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore.
Hongyan LiDepartment of Chemistry, The University of Hong Kong, Hong Kong, P. R. China.ORCID 0000-0002-1158-5871
Hongzhe SunDepartment of Chemistry, The University of Hong Kong, Hong Kong, P. R. China.ORCID 0000-0001-6697-6899
University of Hong Kong · HKSun Yat-sen University · CNChinese Academy of Sciences · CNFudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the broad-spectrum antimicrobial activities of silver, its internal usage is restricted, owing to the toxicity. Strategies to enhance its efficacy are highly desirable but rely heavily on the understanding of its molecular mechanism of action. However, up to now, no direct silver-targeting proteins have been mined at a proteome-wide scale, which hinders systemic studies on the biological pathways interrupted by silver. Herein, we build up a unique system, namely liquid chromatography gel electrophoresis inductively coupled plasma mass spectrometry (LC-GE-ICP-MS), allowing 34 proteins directly bound by silver ions to be identified in Escherichia coli. By using integrated omic approaches, including metalloproteomics, metabolomics, bioinformatics, and systemic biology, we delineated the first dynamic antimicrobial actions of silver (Ag+) in E. coli, i.e., it primarily damages multiple enzymes in glycolysis and tricarboxylic acid (TCA) cycle, leading to the stalling of the oxidative branch of the TCA cycle and an adaptive metabolic divergence to the reductive glyoxylate pathway. It then further damages the adaptive glyoxylate pathway and suppresses the cellular oxidative stress responses, causing systemic damages and death of the bacterium. To harness these novel findings, we coadministrated metabolites involved in the Krebs cycles with Ag+ and found that they can significantly potentiate the efficacy of silver both in vitro and in an animal model. Our study reveals the comprehensive and dynamic mechanisms of Ag+ toxicity in E. coli cells and offers a novel and general approach for deciphering molecular mechanisms of metallodrugs in various pathogens and cells to facilitate the development of new therapeutics.

Indexed as

Anti-Bacterial AgentsAnti-Infective AgentsBacteriaChromatography, LiquidComputational BiologyEscherichia coliEscherichia coli ProteinsMass SpectrometryMetabolomicsProteomicsSilverAnti-Bacterial AgentsAnti-Infective AgentsEscherichia coli ProteinsSilver

Identifiers

PMID31181061
PMCPMC6557469
OpenAlexW2949424106

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.