Evidence map›Paper›PMID 31180554›Full record

ArticleOncology reports2019

Gene expression alterations of human liver cancer cells following borax exposure.

Lun Wu, Ying Wei, Wen-Bo Zhou, You-Shun Zhang, Qin-Hua Chen, Ming-Xing Liu, Zheng-Peng Zhu, Jiao Zhou, Li-Hua Yang, Hong-Mei Wang and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Oncology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Lun WuDepartment of Pancreatic Surgery, Renmin Hospital of Wuhan University, Wuhan University, Wuhan, Hubei 430060, P.R. China.
Ying WeiLiver Surgery Institute of The Experiment Center of Medicine, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, P.R. China.
Wen-Bo ZhouLiver Surgery Institute of The Experiment Center of Medicine, Department of Hepatobiliary Surgery, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, Shiyan, Hubei 442001, P.R. China.
You-Shun ZhangLiver Surgery Institute of The Experiment Center of Medicine, Department of Hepatobiliary Surgery, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, Shiyan, Hubei 442001, P.R. China.
Qin-Hua ChenHubei Key Laboratory of Wudang Local Chinese Medicine Research, Experiment Center of Medicine, Hubei University of Medicine, Shiyan, Hubei 442001, P.R. China.
Ming-Xing LiuDepartment of Pediatrics, YunXi Health for Women And Children, Children's Hospital, Maternal & Child Care and Family Planning Service Centre, Shiyan, Hubei 442600, P.R. China.
Zheng-Peng ZhuDepartment of Pathology, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, P.R. China.
Jiao ZhouLiver Surgery Institute of The Experiment Center of Medicine, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, P.R. China.
Li-Hua YangSubject Construction Office, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, P.R. China.
Hong-Mei WangLiver Surgery Institute of The Experiment Center of Medicine, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, P.R. China.
Guang-Min WeiLiver Surgery Institute of The Experiment Center of Medicine, Department of Hepatobiliary Surgery, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, Shiyan, Hubei 442001, P.R. China.
Sheng WangLiver Surgery Institute of The Experiment Center of Medicine, Dongfeng Hospital, Hubei University of Medicine, Shiyan, Hubei 442001, P.R. China.
Zhi-Gang TangDepartment of Pancreatic Surgery, Renmin Hospital of Wuhan University, Wuhan University, Wuhan, Hubei 430060, P.R. China.
Hubei University of Medicine · CNRenmin Hospital of Wuhan University · CNWuhan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Borax is a boron compound that is becoming widely recognized for its biological effects, including lipid peroxidation, cytotoxicity, genotoxicity, antioxidant activity and potential therapeutic benefits. However, it remains unknown whether exposure of human liver cancer (HepG2) cells to borax affects the gene expression of these cells. HepG2 cells were treated with 4 mM borax for either 2 or 24 h. Gene expression analysis was performed using Affymetrix GeneChip Human Gene 2.0 ST Arrays, which was followed by gene ontology analysis and pathway analysis. The clustering result was validated using reverse transcription‑quantitative polymerase chain reaction. A cell proliferation assay was performed using Celigo Image Cytometer Instrumentation. Following this, 2‑ or 24‑h exposure to borax significantly altered the expression level of a number of genes in HepG2 cells, specifically 530 genes (384 upregulated and 146 downregulated) or 1,763 genes (1,044 upregulated and 719 downregulated) compared with the control group, respectively (≥2‑fold; P<0.05). Twenty downregulated genes were abundantly expressed in HepG2 cells under normal conditions. Furthermore, the growth of HepG2 cells was inhibited through the downregulation of PRUNE1, NBPF1, PPcaspase‑1, UPF2 and MBTPS1 (≥1.5‑fold, P<0.05). The dysregulated genes potentially serve important roles in various biological processes, including the inflammation response, stress response, cellular growth, proliferation, apoptosis and tumorigenesis/oncolysis.

Indexed as

BoratesCell ProliferationGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHep G2 CellsHumansLiver NeoplasmsOligonucleotide Array Sequence AnalysisBoratesborax

Identifiers

PMID31180554
PMCPMC6549072
OpenAlexW2945425300

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.