Evidence map›Paper›PMID 31178611›Full record

ArticleJournal of the American Statistical Association2019

Bayesian Hierarchical Varying-sparsity Regression Models with Application to Cancer Proteogenomics.

Yang Ni, Francesco C Stingo, Min Jin Ha, Rehan Akbani, Veerabhadran Baladandayuthapani

Abstract read
In one paragraph

Article in Journal of the American Statistical Association, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Federated Learning for Sparse Bayesian Models with Applications to Electronic Health Records and Genomics.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yang NiDepartment of Statistics and Data Sciences, The University of Texas at Austin.
Francesco C StingoDepartment of Statistics, Computer Science, Applications "G. Parenti", The University of Florence.
Min Jin HaDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center.
Rehan AkbaniDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center.
Veerabhadran BaladandayuthapaniDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center.

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Graph-based Bayesian analysis of Genomics and Proteomics DataR01CA194391 · NCI · TEXAS A&M UNIVERSITY · PI BALADANDAYUTHAPANI, VEERABHADRAN, MALLICK, BANI K · 2016 to 2020
$2.0M
Integrated analysis of protein expression data from the Reverse Phase Protein Array (RPPA) platformU24CA210950 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AKBANI, REHAN, MILLS, GORDON B. · 2016 to 2020
$1.8M
Integrative methods for high-dimensional genomics dataR01CA160736 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BALADANDAYUTHAPANI, VEERABHADRAN · 2011 to 2014
$1.4M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA160736NCI NIH HHS R01 CA194391NCI NIH HHS U24 CA210950
6 · The paper itself

Abstract

Identifying patient-specific prognostic biomarkers is of critical importance in developing personalized treatment for clinically and molecularly heterogeneous diseases such as cancer. In this article, we propose a novel regression framework,

Indexed as

precision medicinePrognostic biomarkerp-splinesthresholdtumor heterogeneity

Identifiers

PMID31178611
PMCPMC6552682

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.