Evidence map›Paper›PMID 31178587›Full record

ArticleNature chemical biology2019

BAF complex vulnerabilities in cancer demonstrated via structure-based PROTAC design.

William Farnaby, Manfred Koegl, Michael J Roy, Claire Whitworth, Emelyne Diers, Nicole Trainor, David Zollman, Steffen Steurer, Jale Karolyi-Oezguer, Carina Riedmueller and 27 more

Erratum issuedAbstract read
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 277 papers.

0numbers the graph read from it
0cells of the map it votes in
277citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

277 citing papers in PubMed.

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  13. JACS Au · 2026
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  17. The SMARCA4-TMEM47 axis plays an essential role in chikungunya virus RNA replication.Proceedings of the National Academy of Sciences of the United States of America · 2026
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217 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

37 authors.

William FarnabyDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0001-8610-932X
Manfred KoeglBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Michael J RoyDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0003-0198-9108
Claire WhitworthDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0003-3174-7652
Emelyne DiersDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0001-5951-7918
Nicole TrainorDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, UK.
David ZollmanDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, UK.
Steffen SteurerBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Jale Karolyi-OezguerBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Carina RiedmuellerBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Teresa GmaschitzBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Johannes WachterBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Christian DankBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Michael GalantBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Bernadette SharpsBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Klaus RumpelBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Elisabeth TraxlerBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Thomas GerstbergerBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Renate SchnitzerBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Oliver PetermannBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Peter GrebBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Harald WeinstablBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Gerd BaderBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Andreas ZoephelBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Alexander Weiss-PuxbaumBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Katharina Ehrenhöfer-WölferBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.ORCID http://orcid.org/0000-0002-8893-6131
Simon WöhrleBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.ORCID http://orcid.org/0000-0002-2478-7333
Guido BoehmeltBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Joerg RinnenthalBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Heribert ArnhofBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Nicola WiechensCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, UK.
Meng-Ying WuCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, UK.
Tom Owen-HughesCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, UK.
Peter EttmayerBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.ORCID http://orcid.org/0000-0002-8422-2625
Mark PearsonBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria.
Darryl B McConnellBoehringer Ingelheim RCV GmbH & Co KG, Vienna, Austria. darryl.mcconnell@boehringer-ingelheim.com.ORCID http://orcid.org/0000-0002-2537-3458
Alessio CiulliDivision of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, UK. a.ciulli@dundee.ac.uk.ORCID http://orcid.org/0000-0002-8654-1670

Funding

European Research Council 311460
6 · The paper itself

Abstract

Targeting subunits of BAF/PBAF chromatin remodeling complexes has been proposed as an approach to exploit cancer vulnerabilities. Here, we develop proteolysis targeting chimera (PROTAC) degraders of the BAF ATPase subunits SMARCA2 and SMARCA4 using a bromodomain ligand and recruitment of the E3 ubiquitin ligase VHL. High-resolution ternary complex crystal structures and biophysical investigation guided rational and efficient optimization toward ACBI1, a potent and cooperative degrader of SMARCA2, SMARCA4 and PBRM1. ACBI1 induced anti-proliferative effects and cell death caused by SMARCA2 depletion in SMARCA4 mutant cancer cells, and in acute myeloid leukemia cells dependent on SMARCA4 ATPase activity. These findings exemplify a successful biophysics- and structure-based PROTAC design approach to degrade high profile drug targets, and pave the way toward new therapeutics for the treatment of tumors sensitive to the loss of BAF complex ATPases.

Indexed as

Cell ProliferationCells, CulturedChromatin Assembly and DisassemblyDNA-Binding ProteinsHumansLeukemia, Myeloid, AcuteMolecular StructureNuclear ProteinsBANF1 protein, humanDNA-Binding ProteinsNuclear Proteins

Identifiers

PMID31178587
PMCPMC6600871

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.