Evidence map›Paper›PMID 31178355›Full record

ArticleMolecular cell2019

Live-Cell Single RNA Imaging Reveals Bursts of Translational Frameshifting.

Kenneth Lyon, Luis U Aguilera, Tatsuya Morisaki, Brian Munsky, Timothy J Stasevich

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 57 citations in OpenAlex.

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  16. Translation Dynamics of Single mRNAs in Live Cells.Annual review of biophysics · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Kenneth LyonDepartment of Biochemistry and Molecular Biology, Institute of Genome Architecture and Function, Colorado State University, Fort Collins, CO 80523, USA.
Luis U AguileraDepartment of Chemical and Biological Engineering and School of Biomedical Engineering, Colorado State University, Fort Collins, CO 80523, USA.
Tatsuya MorisakiDepartment of Biochemistry and Molecular Biology, Institute of Genome Architecture and Function, Colorado State University, Fort Collins, CO 80523, USA.
Brian MunskyDepartment of Chemical and Biological Engineering and School of Biomedical Engineering, Colorado State University, Fort Collins, CO 80523, USA. Electronic address: brian.munsky@colostate.edu.
Timothy J StasevichDepartment of Biochemistry and Molecular Biology, Institute of Genome Architecture and Function, Colorado State University, Fort Collins, CO 80523, USA; World Research Hub Initiative, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Kanagawa 226-8503, Japan. Electronic address: tim.stasevich@colostate.edu.
Colorado State University · US

Funding

Quantifying the coordinated dynamics of single-gene transcription and translation in living cellsR35GM119728 · NIGMS · COLORADO STATE UNIVERSITY · PI Timothy Stasevich · 2016 to 2026
$4.2M
NIGMS NIH HHS R35 GM119728
6 · The paper itself

Abstract

Ribosomal frameshifting during the translation of RNA is implicated in human disease and viral infection. While previous work has uncovered many details about single RNA frameshifting kinetics in vitro, little is known about how single RNA frameshift in living systems. To confront this problem, we have developed technology to quantify live-cell single RNA translation dynamics in frameshifted open reading frames. Applying this technology to RNA encoding the HIV-1 frameshift sequence reveals a small subset (∼8%) of the translating pool robustly frameshift. Frameshifting RNA are translated at similar rates as non-frameshifting RNA (∼3 aa/s) and can continuously frameshift for more than four rounds of translation. Fits to a bursty model of frameshifting constrain frameshifting kinetic rates and demonstrate how ribosomal traffic jams contribute to the persistence of the frameshifting state. These data provide insight into retroviral frameshifting and could lead to alternative strategies to perturb the process in living cells.

Indexed as

Frameshifting, RibosomalOpen Reading FramesBase PairingCell Line, TumorHIV-1HumansModels, GeneticNucleic Acid ConformationOligonucleotide ProbesOligopeptidesOsteoblastsRNA, ViralSingle Molecule ImagingStaining and LabelingFLAG peptideOligonucleotide ProbesOligopeptidesRNA, Viralcomputational modelingfluorescence microscopyframeshiftingHIV-1live-cell imagingribosomal traffic jamsRNA translationsingle-molecule imagingstochastic gene expressiontranslational heterogeneity

Identifiers

PMID31178355
PMCPMC9074717
OpenAlexW2951254268

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.