Evidence map›Paper›PMID 31177770›Full record

ArticleAnalytical chemistry2019

A Novel Mass Spectrometry Platform for Multiplexed N-Glycoprotein Biomarker Discovery from Patient Biofluids by Antibody Panel Based N-Glycan Imaging.

Alyson P Black, Hongyan Liang, Connor A West, Mengjun Wang, Harmin P Herrera, Brian B Haab, Peggi M Angel, Richard R Drake, Anand S Mehta

Abstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  14. High sensitivity glycomics in biomedicine.Mass spectrometry reviews · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alyson P BlackDepartment of Cell and Molecular Pharmacology , Medical University of South Carolina , 173 Ashley Avenue, BSB 310 , Charleston , South Carolina 29425 , United States.ORCID 0000-0002-1847-4197
Hongyan LiangDepartment of Cell and Molecular Pharmacology , Medical University of South Carolina , 173 Ashley Avenue, BSB 310 , Charleston , South Carolina 29425 , United States.
Connor A WestDepartment of Cell and Molecular Pharmacology , Medical University of South Carolina , 173 Ashley Avenue, BSB 310 , Charleston , South Carolina 29425 , United States.
Mengjun WangDepartment of Cell and Molecular Pharmacology , Medical University of South Carolina , 173 Ashley Avenue, BSB 310 , Charleston , South Carolina 29425 , United States.
Harmin P HerreraDepartment of Microbiology and Immunology , Drexel University College of Medicine , 2900 Queen Lane , Philadephia , Pennsylvania 19129 , United States.
Brian B HaabVan Andel Research Institute , 333 Bostwick Ave. , Grand Rapids , Michigan 49503 , United States.ORCID 0000-0002-3471-1535
Peggi M AngelDepartment of Cell and Molecular Pharmacology , Medical University of South Carolina , 173 Ashley Avenue, BSB 310 , Charleston , South Carolina 29425 , United States.ORCID 0000-0002-4436-555X
Richard R DrakeDepartment of Cell and Molecular Pharmacology , Medical University of South Carolina , 173 Ashley Avenue, BSB 310 , Charleston , South Carolina 29425 , United States.
Anand S MehtaDepartment of Cell and Molecular Pharmacology , Medical University of South Carolina , 173 Ashley Avenue, BSB 310 , Charleston , South Carolina 29425 , United States.ORCID 0000-0002-9846-9389

Funding

South Carolina Clinical & Translational Research Institute (SCTR)UL1TR001450 · NCATS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T., FLUME, PATRICK A · 2015 to 2024
$41.1M
South Carolina Clinical & Translational Research Institute (SCTR)TL1TR001451 · NCATS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI FEGHALI-BOSTWICK, CAROL A. · 2015 to 2024
$4.6M
Subpopulations of Pancreatic Cancer Cells Defined by Glycan MarkersU01CA226158 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI BRAND, RANDALL, HAAB, BRIAN B. · 2019 to 2023
$3.2M
Glycopathology of HCC: identification of the source cells of serum fucosylationU01CA226052 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DRAKE, RICHARD R., HOSHIDA, YUJIN · 2019 to 2023
$2.8M
Glyco-typer: an antibody capture glycan imaging methodologyR21CA225474 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI HAAB, BRIAN B., MEHTA, ANAND S. · 2018 to 2019
$731k
NCATS NIH HHS TL1 TR001451NCATS NIH HHS UL1 TR001450NCI NIH HHS R21 CA225474NCI NIH HHS U01 CA226052NCI NIH HHS U01 CA226158
6 · The paper itself

Abstract

A new platform for N-glycoprotein analysis from serum that combines matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI MSI) workflows with antibody slide arrays is described. Antibody panel based (APB) N-glycan imaging allows for the specific capture of N-glycoproteins by antibodies on glass slides and N-glycan analysis in a protein-specific and multiplexed manner. Development of this technique has focused on characterizing two abundant and well-studied human serum glycoproteins, alpha-1-antitrypsin and immunoglobulin G. Using purified standard solutions and 1 μL samples of human serum, both glycoproteins can be immunocaptured and followed by enzymatic release of N-glycans. N-Glycans are detected with a MALDI FT-ICR mass spectrometer in a concentration-dependent manner while maintaining specificity of capture. Importantly, the N-glycans detected via slide-based antibody capture were identical to that of direct analysis of the spotted standards. As a proof of concept, this workflow was applied to patient serum samples from individuals with liver cirrhosis to accurately detect a characteristic increase in an IgG N-glycan. This novel approach to protein-specific N-glycan analysis from an antibody panel can be further expanded to include any glycoprotein for which a validated antibody exists. Additionally, this platform can be adapted for analysis of any biofluid or biological sample that can be analyzed by antibody arrays.

Indexed as

BiomarkersCase-Control StudiesGlycomicsGlycoproteinsGlycosylationHumansLiver CirrhosisOptical ImagingPolysaccharidesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiomarkersGlycoproteinsPolysaccharides

Identifiers

PMID31177770
PMCPMC7017646

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.