Evidence map›Paper›PMID 31177435›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2019

Detection of Cells Translocated with Yersinia Yops in Infected Tissues Using β-Lactamase Fusions.

Giang T Nguyen, Anne L McCabe, Alyssa C Fasciano, Joan Mecsas

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Giang T NguyenImmunology Graduate Program, Sackler School of Biomedical Science, Boston, MA, USA.
Anne L McCabeDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Alyssa C FascianoImmunology Graduate Program, Sackler School of Biomedical Science, Boston, MA, USA.
Joan MecsasDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA. joan.mecsas@tufts.edu.
Tufts University · US

Funding

Tufts IRACDAK12GM133314 · NIGMS · TUFTS UNIVERSITY BOSTON · PI CLAIRE L MOORE, Jamie Lynn Maguire · 2019 to 2026
$8.4M
Initiation and regulation of antibacterial innate immunityR01AI113166 · NIAID · TUFTS UNIVERSITY BOSTON · PI MECSAS, JOAN C · 2014 to 2018
$2.4M
Bifunctional Control of Yop Translocation by YopKR01AI107055 · NIAID · TUFTS UNIVERSITY BOSTON · PI MARKETON, MELANIE · 2013 to 2017
$1.9M
T3SS needle protein inhibitors for the treatment of P. aeruginosa infectionR41AI122433 · NIAID · MICROBIOTIX, INC · PI MECSAS, JOAN C · 2016 to 2017
$601k
A tunable 3D human small intestinal tissue model for study of enteric pathogensR21AI128093 · NIAID · TUFTS UNIVERSITY BOSTON · PI MECSAS, JOAN C · 2017 to 2018
$441k
NIAID NIH HHS R01 AI107055NIAID NIH HHS R01 AI113166NIAID NIH HHS R21 AI128093NIAID NIH HHS R41 AI122433NIGMS NIH HHS K12 GM133314
6 · The paper itself

Abstract

Development of the TEM-CCF2/4-AM FRET-based system has enabled investigators to track translocation of effector proteins into mammalian cells during infection. This allows for separation of translocated and non-translocated cell populations for further study. Yersinia strains expressing translational Yop-TEM fusions, containing the secretion and translocation signals of a Yop with the TEM-1 portion of β-lactamase, are used to infect mice, tissues isolated from mice, or mammalian cells in culture. Infected and harvested mammalian cells are treated with either CCF2-AM or CCF4-AM, and cleavage of this fluorescent compound by TEM is detected by fluorescence-activated cell sorting (FACS) analysis. A shift from green to blue emission spectra of individual cells is indicative of translocation of a given Yop-TEM fusion protein into the host cell during Yersinia infection due to a disruption in FRET between the two fluors of the compound. In Yersinia, this method has been used to understand Type III secretion dynamics and Yop functions in cells translocated by effectors during infection. Here, we describe how to generate Yop-TEM constructs, and how to detect, quantify, isolate, and study Yop-TEM containing cells in murine tissues during infection and in ex vivo tissues by cell sorting and flow cytometry analysis. In addition, we provide guidance for analyzing TEM-positive cells via a plate reader and fluorescent microscopy.

Indexed as

AnimalsBacterial Proteinsbeta-LactamasesDisease Models, AnimalFlow CytometryHumansMiceMicroscopyNeutrophilsRecombinant Fusion ProteinsType III Secretion SystemsYersiniaYersinia InfectionsBacterial Proteinsbeta-LactamasesRecombinant Fusion ProteinsType III Secretion SystemsBlaCCF2CCF4FACSFlow cytometryNeutrophilsT3SSTEMTranslocationType III secretionYersiniaYopsYop translational fusionsβ-Lactamase

Identifiers

PMID31177435
PMCPMC6733027
OpenAlexW2954109558

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.