Evidence map›Paper›PMID 31175912›Full record

ArticleBiochimica et biophysica acta. General subjects2019

The specificity of ubiquitin binding to ubiquilin-1 is regulated by sequences besides its UBA domain.

Christine A Harman, Mervyn J Monteiro

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. General subjects, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation?BioEssays : news and reviews in molecular, cellular and developmental biology · 2020
    Review
  8. Review
  9. Article
  10. ALS/FTD mutations in UBQLN2 impede autophagy by reducing autophagosome acidification through loss of function.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Review
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christine A HarmanCenter for Biomedical Engineering and Technology, Department of Anatomy and Neurobiology, University of Maryland School of Medicine, Baltimore, MD, United States. Electronic address: Christine.harman@fda.hhs.gov.
Mervyn J MonteiroCenter for Biomedical Engineering and Technology, Department of Anatomy and Neurobiology, University of Maryland School of Medicine, Baltimore, MD, United States. Electronic address: monteiro@som.umaryland.edu.
University of Maryland, Baltimore · US

Funding

Mechanistic studies and therapeutics for ALS/FTD linked to UBQLN2 mutationsR01NS098243 · NINDS · UNIVERSITY OF MARYLAND BALTIMORE · PI Mervyn J Monteiro · 2017 to 2026
$4.0M
Deciphering the role of ER stress in ALS pathogenesis caused by UBQLN2 mutationsR01NS100008 · NINDS · UNIVERSITY OF MARYLAND BALTIMORE · PI MONTEIRO, MERVYN J · 2017 to 2021
$2.7M
NINDS NIH HHS R01 NS098243NINDS NIH HHS R01 NS100008
6 · The paper itself

Abstract

UBQLN proteins regulate proteostasis by facilitating clearance of misfolded proteins through the proteasome and autophagy degradation pathways. Consistent with its proteasomal function, UBQLN proteins contain both UBL and UBA domains, which bind subunits of the proteasome, including the S5a subunit, and ubiquitin chains, respectively. Conclusions regarding the binding properties of UBQLN proteins have been derived principally through studies of its individual domains, not the full-length (FL) proteins. Here we describe the in vitro binding properties of FL-UBQLN1 with the S5a subunit of the proteasome and two different lysine-linked (K48 or K63) ubiquitin chains. We show that in contrast to its isolated UBA domain, which binds almost equally well with both K48 and K63 ubiquitin chains, FL UBQLN1 binds preferentially with K63 chains. Furthermore, we show that deletion of the UBL domain from UBQLN1 abrogates ubiquitin binding. Taken together these results suggest that sequences outside of the UBA domain in UBQLN1 function to regulate the specificity and binding with different ubiquitin moieties. We also show that the UBL domain of UBQLN1 is required for S5a binding and that its binding to UBQLN1, in turn, enhances K48 ubiquitin chain binding to the complex. We discuss the implications of our findings with the known function of UBQLN proteins in protein degradation.

Indexed as

Adaptor Proteins, Signal TransducingAutophagy-Related ProteinsHumansProteasome Endopeptidase ComplexProtein BindingProtein DomainsProteolysisUbiquitinAdaptor Proteins, Signal TransducingAutophagy-Related ProteinsProteasome Endopeptidase ComplexUbiquitinUBQLN1 protein, humanPolyubiquitinUBA domainUbiquilinUBL domainUBQLN1

Identifiers

PMID31175912
PMCPMC6679980
OpenAlexW2950189828

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.