Evidence map›Paper›PMID 31175426›Full record

ArticleHuman genetics2019

A truncating CLDN9 variant is associated with autosomal recessive nonsyndromic hearing loss.

Claire J Sineni, Muzeyyen Yildirim-Baylan, Shengru Guo, Vladimir Camarena, Gaofeng Wang, Suna Tokgoz-Yilmaz, Duygu Duman, Guney Bademci, Mustafa Tekin

Open access · greenAbstract read
In one paragraph

Article in Human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  7. ARNSHL gene identification: past, present and future.Molecular genetics and genomics : MGG · 2022
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  14. Review
  15. Claudin-1, A Double-Edged Sword in Cancer.International journal of molecular sciences · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Claire J SineniJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, 1501 NW 10th Avenue BRB-610 (M-860), Miami, FL, USA.
Muzeyyen Yildirim-BaylanDepartment of Otorhinolaryngology, Dicle University School of Medicine, Diyarbakır, Turkey.
Shengru GuoJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, 1501 NW 10th Avenue BRB-610 (M-860), Miami, FL, USA.
Vladimir CamarenaJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, 1501 NW 10th Avenue BRB-610 (M-860), Miami, FL, USA.
Gaofeng WangJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, 1501 NW 10th Avenue BRB-610 (M-860), Miami, FL, USA.
Suna Tokgoz-YilmazDepartment of Audiology, Ankara University Health Sciences Faculty, Ankara, Turkey.
Duygu DumanDepartment of Audiology, Ankara University Health Sciences Faculty, Ankara, Turkey.
Guney BademciJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, 1501 NW 10th Avenue BRB-610 (M-860), Miami, FL, USA.
Mustafa TekinJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, 1501 NW 10th Avenue BRB-610 (M-860), Miami, FL, USA. mtekin@med.miami.edu.
University of Miami · USAnkara University · TRDicle University · TRDr. John T. Macdonald Foundation · US

Funding

A Collaborative Search for New Genes for Non-Syndromic DeafnessR01DC009645 · NIDCD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MUSTAFA TEKIN · 2010 to 2026
$11.8M
Genetic Studies of Inner Ear AnomaliesR01DC012836 · NIDCD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI TEKIN, MUSTAFA · 2013 to 2017
$3.2M
NIDCD NIH HHS R01 DC009645NIDCD NIH HHS R01DC009645NIDCD NIH HHS R01 DC012836NIDCD NIH HHS R01DC012836
6 · The paper itself

Abstract

While the importance of tight junctions in hearing is well established, the role of Claudin- 9 (CLDN9), a tight junction protein, in human hearing and deafness has not been explored. Through whole-genome sequencing, we identified a one base pair deletion (c.86delT) in CLDN9 in a consanguineous family from Turkey with autosomal recessive nonsyndromic hearing loss. Three affected members of the family had sensorineural hearing loss (SNHL) ranging from moderate to profound in severity. The variant is predicted to cause a frameshift and produce a truncated protein (p.Leu29ArgfsTer4) in this single-exon gene. It is absent in public databases as well as in over 1000 Turkish individuals, and co-segregates with SNHL in the family. Our in vitro studies demonstrate that the mutant protein does not localize to cell membrane as demonstrated for the wild-type protein. Mice-lacking Cldn9 have been shown to develop SNHL. We conclude that CLDN9 is essential for proper audition in humans and its disruption leads to SNHL in humans.

Indexed as

Genes, RecessiveGenetic Association StudiesGenetic Predisposition to DiseaseGenetic VariationClaudinsComputational BiologyDeafnessDNA Mutational AnalysisFemaleFrameshift MutationHumansMutationPedigreePolymorphism, GeneticProtein TransportTurkeyClaudinsCLDN9 protein, human

Identifiers

PMID31175426
PMCPMC6745279
OpenAlexW2954376762

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.