Evidence map›Paper›PMID 31175163›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2019

Human Eosinophils Express a Distinct Gene Expression Program in Response to IL-3 Compared with Common β-Chain Cytokines IL-5 and GM-CSF.

Ryan K Nelson, Howard Brickner, Bharat Panwar, Ciro Ramírez-Suástegui, Sara Herrera-de la Mata, Neiman Liu, Damaris Diaz, Laura E Crotty Alexander, Ferhat Ay, Pandurangan Vijayanand and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Ryan K NelsonDivision of Pulmonary, Critical Care, and Sleep Medicine, University of California San Diego, La Jolla, CA 92037.
Howard BricknerDivision of Pulmonary, Critical Care, and Sleep Medicine, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0003-0075-7399
Bharat PanwarLa Jolla Institute for Immunology, La Jolla, CA 92037.
Ciro Ramírez-SuásteguiLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0001-8126-710X
Sara Herrera-de la MataLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-9519-9520
Neiman LiuDivision of Pulmonary, Critical Care, and Sleep Medicine, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0002-7266-2404
Damaris DiazDivision of Pulmonary, Critical Care, and Sleep Medicine, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0002-3347-9578
Laura E Crotty AlexanderDivision of Pulmonary, Critical Care, and Sleep Medicine, University of California San Diego, La Jolla, CA 92037.ORCID 0000-0002-5091-2660
Ferhat AyLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-0708-6914
Pandurangan VijayanandLa Jolla Institute for Immunology, La Jolla, CA 92037.
Grégory SeumoisLa Jolla Institute for Immunology, La Jolla, CA 92037.ORCID 0000-0002-8164-6852
Praveen AkuthotaDivision of Pulmonary, Critical Care, and Sleep Medicine, University of California San Diego, La Jolla, CA 92037; pakuthota@ucsd.edu.
La Jolla Institute for Immunology · USUniversity of California System · US

Funding

Epigenomics of T cells and innate immune cells in human asthmaR01HL114093 · NHLBI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI ARSHAD, SYED HASAN, PETERS, BJOERN · 2011 to 2020
$8.5M
Epigenome-wide association study of childhood asthmaR01AI121426 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI ARSHAD, SYED HASAN, PETERS, BJOERN · 2017 to 2021
$3.9M
CC Chemokine-Mediated Differential Immunoregulation by Human EosinophilsK08HL116429 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AKUTHOTA, PRAVEEN · 2014 to 2018
$788k
Illumina HiSeq 2500 Sequencing SystemS10OD016262 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2013 to 2013
$600k
NHLBI NIH HHS K08 HL116429NHLBI NIH HHS R01 HL114093NIAID NIH HHS R01 AI121426NIH HHS S10 OD016262
6 · The paper itself

Abstract

Despite recent advances in asthma management with anti-IL-5 therapies, many patients have eosinophilic asthma that remains poorly controlled. IL-3 shares a common β subunit receptor with both IL-5 and GM-CSF but, through α-subunit-specific properties, uniquely influences eosinophil biology and may serve as a potential therapeutic target. We aimed to globally characterize the transcriptomic profiles of GM-CSF, IL-3, and IL-5 stimulation on human circulating eosinophils and identify differences in gene expression using advanced statistical modeling. Human eosinophils were isolated from the peripheral blood of healthy volunteers and stimulated with either GM-CSF, IL-3, or IL-5 for 48 h. RNA was then extracted and bulk sequencing performed. DESeq analysis identified differentially expressed genes and weighted gene coexpression network analysis independently defined modules of genes that are highly coexpressed. GM-CSF, IL-3, and IL-5 commonly upregulated 252 genes and downregulated 553 genes, producing a proinflammatory and survival phenotype that was predominantly mediated through TWEAK signaling. IL-3 stimulation yielded the most numbers of differentially expressed genes that were also highly coexpressed (

Indexed as

AsthmaCytokinesDown-RegulationEosinophilsGene ExpressionGranulocyte-Macrophage Colony-Stimulating FactorHumansInterleukin-3Interleukin-5Signal TransductionUp-RegulationCSF2 protein, humanCytokinesGranulocyte-Macrophage Colony-Stimulating FactorIL3 protein, humanIL5 protein, humanInterleukin-3Interleukin-5

Identifiers

PMID31175163
PMCPMC6616007
OpenAlexW2956850931

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.