Evidence map›Paper›PMID 31175093›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2019

High-Resolution Bisulfite-Sequencing of Peripheral Blood DNA Methylation in Early-Onset and Familial Risk Breast Cancer Patients.

Justin Chen, Maria K Haanpää, Joshua J Gruber, Natalie Jäger, James M Ford, Michael P Snyder

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Peripheral bloodJournal of gynecologic oncology · 2021
    Article
  7. DNA methylation and regulation of gene expression: Guardian of our health.The Nucleus : an international journal of cytology and allied topics · 2021
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Justin Chen *Department of Genetics, Stanford University, Stanford, California.ORCID 0000-0002-1661-4547
Maria K Haanpää *Department of Medicine, Oncology Division, Stanford University, Stanford, California.ORCID 0000-0003-3731-863X
Joshua J GruberDepartment of Genetics, Stanford University, Stanford, California.
Natalie JägerDepartment of Genetics, Stanford University, Stanford, California.
James M FordDepartment of Genetics, Stanford University, Stanford, California. mpsnyder@stanford.edu jmf@stanford.edu.ORCID 0000-0002-2513-7025
Michael P SnyderDepartment of Genetics, Stanford University, Stanford, California. mpsnyder@stanford.edu jmf@stanford.edu.
Stanford Medicine · USStanford University · US

Funding

Special EquipmentP50HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2014 to 2018
$15.2M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
High-throughput sequencer for multi-scale genomic studiesS10OD020141 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2015 to 2015
$600k
NHGRI NIH HHS P50 HG007735NHGRI NIH HHS RM1 HG007735NIH HHS S10 OD020141
6 · The paper itself

Abstract

purposeUnderstanding and explaining hereditary predisposition to cancer has focused on the genetic etiology of the disease. However, mutations in known genes associated with breast cancer, such as EXPERIMENTAL

designWe examined DNA methylation through deep bisulfite sequencing of CpG islands and known promoter or regulatory regions in peripheral blood DNA from 99 patients with familial or early-onset breast or ovarian cancer, 6 unaffected

resultsIn 9% of patients, we observed altered methylation in the promoter regions of genes known to be involved in cancer, including hypermethylation at the tumor suppressor

conclusionsOur observations suggest a broader role for DNA methylation in early-onset, familial risk breast cancer. Further studies are warranted to clarify these mechanisms and the benefits of DNA methylation screening for early risk prediction of familial cancers.

Indexed as

DNA MethylationAdultBiomarkers, TumorBRCA1 ProteinBRCA2 ProteinBreast NeoplasmsCase-Control StudiesCpG IslandsEpigenomicsFemaleGenetic Predisposition to DiseaseHumansMiddle AgedNeoplastic Syndromes, HereditaryPromoter Regions, GeneticProto-Oncogene MasBiomarkers, TumorBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, humanhydrogen sulfiteMAS1 protein, humanProto-Oncogene MasPTEN PhosphohydrolasePTEN protein, humanSulfitesTEX14 protein, humanTranscription Factors

Identifiers

PMID31175093
PMCPMC6726519
OpenAlexW2948168430

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.