Evidence map›Paper›PMID 31174538›Full record

Observational studyRespiratory research2019

Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study.

Alexa A Pragman, Katherine A Knutson, Trevor J Gould, Richard E Isaacson, Cavan S Reilly, Chris H Wendt

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in Respiratory research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 52 citations in OpenAlex.

  1. Pooled it
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  6. Article
  7. Nasal Microbiota Associated with the Lung Radiomic Features in Asthma.International journal of general medicine · 2026
    Article
  8. Review
  9. Why the COPD Microbiome Matters: How Airway Microbes Shape Disease Severity and Treatment Response.International journal of chronic obstructive pulmonary disease · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Alexa A PragmanDepartment of Medicine, University of Minnesota and Minneapolis Veterans Affairs Medical Center, 1 Veterans Dr, Minneapolis, MN, 55417, USA. alexa@umn.edu.ORCID http://orcid.org/0000-0001-8152-3951
Katherine A KnutsonDivision of Biostatistics, University of Minnesota School of Public Health, University Office Plaza, 2221 University Ave. SE - Suite 200, Minneapolis, MN, 55414, USA.
Trevor J GouldUniversity of Minnesota Informatics Institute, Biological Science Dean's Office, Room 123 SnH, 6174A, 1475 Gortner Ave, St. Paul, MN, 55108, USA.
Richard E IsaacsonDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Room 205G VetS, 6187A, 1971 Commonwealth Ave, St. Paul, MN, 55108, USA.
Cavan S ReillyDivision of Biostatistics, University of Minnesota School of Public Health, University Office Plaza, 2221 University Ave. SE - Suite 200, Minneapolis, MN, 55414, USA.
Chris H WendtDepartment of Medicine, University of Minnesota and Minneapolis Veterans Affairs Medical Center, 1 Veterans Dr, Minneapolis, MN, 55417, USA.
University of Minnesota · USUniversity of Minnesota Medical Center · USVeterans Health Administration · US

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR000114 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R · 2012 to 2015
$35.0M
University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR002494 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R, WEISDORF, DANIEL J · 2018 to 2022
$34.9M
Institutional Career Development CoreKL2TR002492 · NCATS · UNIVERSITY OF MINNESOTA · PI INGBAR, DAVID H · 2018 to 2022
$6.3M
Infectious Disease Training in Clinical InvestigationT32AI055433 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI David R Boulware · 2003 to 2026
$6.1M
Biostatistics in Genetics and Genomics Training ProgramT32GM108557 · NIGMS · UNIVERSITY OF MINNESOTA · PI PAN, WEI · 2014 to 2018
$583k
Evaluation of the Oral and Lung Microbiota and Inflammation in Chronic Obstructive Pulmonary Disease Frequent ExacerbatorsIK2CX001095 · VA · MINNEAPOLIS VA MEDICAL CENTER · PI PRAGMAN, ALEXA A · 2016 to 2021
–
CSRD VA IK2 CX001095National Institute of Allergy and Infectious Diseases 5T32AI055433NCATS NIH HHS KL2 TR002492NCATS NIH HHS UL1 TR000114NCATS NIH HHS UL1 TR002494NIAID NIH HHS T32 AI055433NIGMS NIH HHS T32 GM108557NIH HHS 8UL1TR000114; 5KL2TR113U.S. Department of Veterans Affairs 1IK2CX001095
6 · The paper itself

Abstract

backgroundChronic obstructive pulmonary disease (COPD) frequent exacerbators (FE) suffer increased morbidity and mortality compared to infrequent exacerbators (IE). The association between the oral and sputum microbiota and exacerbation phenotype is not well defined. The objective of this study was to determine key features that differentiate the oral and sputum microbiota of FEs from the microbiota of IEs during periods of clinical stability.

methodsWe recruited 11 FE and 11 IE who had not used antibiotics or systemic corticosteroids in the last 1 month. Subjects provided oral wash and sputum samples, which underwent 16S V4 MiSeq sequencing and qPCR of 16S rRNA. Data were analyzed using Dada2 and R.

resultsFE and IE were similar in terms of age, FEV

conclusionsFE have less diverse oral and sputum microbiota than IE. Actinomyces was significantly more abundant in IE sputum than FE sputum. The oral and sputum microbiota of COPD subjects cluster based on multiple clinical factors, including exacerbation phenotype. Even during periods of clinical stability, the frequent exacerbator phenotype is associated with decreased alpha diversity, beta-diversity clustering, and changes in taxonomic abundance.

Indexed as

PhenotypeAgedCase-Control StudiesFemaleHaemophilusHumansLungMaleMicrobiotaMiddle AgedMoraxellaProspective StudiesPulmonary Disease, Chronic ObstructiveSputumHaemophilusMicrobiotaMoraxellaPhenotypePulmonary disease, chronic obstructiveRNA, ribosomal, 16SSputumStreptococcus

Identifiers

PMID31174538
PMCPMC6555967
OpenAlexW2948836567

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.