Evidence map›Paper›PMID 31172947›Full record

ArticleeLife2019

HDX-MS reveals structural determinants for RORγ hyperactivation by synthetic agonists.

Timothy S Strutzenberg, Ruben D Garcia-Ordonez, Scott J Novick, HaJeung Park, Mi Ra Chang, Christelle Doebellin, Yuanjun He, Rémi Patouret, Theodore M Kamenecka, Patrick R Griffin

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Fundamentals of HDX-MS.Essays in biochemistry · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. α-Synuclein kinetically regulates the nascent fusion pore dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. RORγ Structural Plasticity and Druggability.International journal of molecular sciences · 2020
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Timothy S StrutzenbergDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.ORCID https://orcid.org/0000-0003-0598-534X
Ruben D Garcia-OrdonezDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
Scott J NovickDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
HaJeung ParkDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
Mi Ra ChangDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
Christelle DoebellinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
Yuanjun HeDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
Rémi PatouretDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
Theodore M KameneckaDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.
Patrick R GriffinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, United States.ORCID https://orcid.org/0000-0002-3404-690X
Scripps Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the nuclear receptor (NR) superfamily regulate both physiological and pathophysiological processes ranging from development and metabolism to inflammation and cancer. Synthetic small molecules targeting NRs are often deployed as therapeutics to correct aberrant NR signaling or as chemical probes to explore the role of the receptor in physiology. Nearly half of NRs do not have specific cognate ligands (termed orphan NRs) and it's unclear if they possess ligand dependent activities. Here we demonstrate that ligand-dependent action of the orphan RORγ can be defined by selectively disrupting putative endogenous-but not synthetic-ligand binding. Furthermore, the characterization of a library of RORγ modulators reveals that structural dynamics of the receptor assessed by HDX-MS correlate with activity in biochemical and cell-based assays. These findings, corroborated with X-ray co-crystallography and site-directed mutagenesis, collectively reveal the structural determinants of RORγ activation, which is critical for designing RORγ agonists for cancer immunotherapy.

Indexed as

Hydrogen Deuterium Exchange-Mass SpectrometryHEK293 CellsHumansLigandsModels, MolecularNuclear Receptor Subfamily 1, Group F, Member 3Protein BindingStatic ElectricityLigandsNuclear Receptor Subfamily 1, Group F, Member 3biochemistrychemical biologyhumanhydrogen-deuterium exchangeligand activationnuclear receptors

Identifiers

PMID31172947
PMCPMC6579513
OpenAlexW2923042949

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.